1.Biohub / esm
The repository host gives no description.
+138 stars
from 2,877 · score 4.93
Trending repositories
Ranked by Attention Score: stars gained over the last 90 complete days
26 repositories by Attention Score · Aug 7, 2026 – Nov 4, 2026 (UTC)
+86 stars
from 1,813 · score 4.47
+56 stars
from 1,606 · score 4.04
4.mims-harvard / PrimeKG
Precision Medicine Knowledge Graph (PrimeKG)
- knowledge-graph
- precision-medicine
- therapeutics
- bioinformatics
- dataset
- graph-machine-learning
- +2 more
+37 stars
from 801 · score 3.64
5.songlab-cal / gpn
Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star
- dna
- language-model
- variant-effect-prediction
- genomics
+37 stars
from 350 · score 3.64
6.instadeepai / nucleotide-transformer
Foundation Models for Genomics & Transcriptomics
- genomics
- deep-learning
- transformer
- dna
- foundation-models
- transcriptomics
- +1 more
+34 stars
from 903 · score 3.56
7.kexinhuang12345 / DeepPurpose
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
- drug-repurposing
- deep-learning
- drug-target-interactions
- toolkit
- covid19
- virtual-screening
- +13 more
+30 stars
from 1,171 · score 3.43
8.KangBoming / BulkFormer
BulkFormer: A large-scale foundation model for human bulk transcriptomes
+14 stars
from 73 · score 2.71
9.biomap-research / scFoundation
The repository host gives no description.
+13 stars
from 419 · score 2.64
10.kexinhuang12345 / MolTrans
MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
+12 stars
from 239 · score 2.56
11.sanderlab / scPerturb
scPerturb: A resource and a python/R tool for single-cell perturbation data
+10 stars
from 182 · score 2.40
12.theislab / nicheformer
Repository for Nicheformer: a foundation model for single-cell and spatial omics
+10 stars
from 169 · score 2.40
13.Durenlab / LINGER
The repository host gives no description.
+10 stars
from 132 · score 2.40
14.agemagician / ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
+9 stars
from 1,314 · score 2.30
15.theislab / scarches
Reference mapping for single-cell genomics
- single-cell
- deep-learning
- rna-seq-analysis
- data-integration
- batch-correction
- multimodal-deep-learning
- +4 more
+9 stars
from 405 · score 2.30
16.cantinilab / scPRINT
🏃 The go-to single-cell Foundation Model
- batch-correction
- cell-biology
- celltype-annotation
- denoising
- embeddings
- gene-regulatory-network
- +12 more
+8 stars
from 156 · score 2.20
17.Perturbation-Response-Prediction / PRnet
PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.
+8 stars
from 84 · score 2.20
18.snap-stanford / SATURN
The repository host gives no description.
+7 stars
from 169 · score 2.08
19.theislab / chemCPA
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
- disentanglement
- drug-discovery
- genomics
- perturbation
- single-cell
- transfer-learning
+7 stars
from 155 · score 2.08
20.J-SNACKKB / FLIP
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
- protein
- protein-sequences
- protein-design
- representation-learning
- protein-fitness-prediction
- protein-function-prediction
+7 stars
from 137 · score 2.08
21.yiqunchen / GenePT
The repository host gives no description.
+6 stars
from 320 · score 1.95
22.OmicsML / CellPLM
Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
+6 stars
from 103 · score 1.95
+4 stars
from 120 · score 1.61
24.mahmoodlab / PORPOISE
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
- histology
- wsi-images
- pan-cancer-analysis
- genomics
- mahmoodlab
+3 stars
from 249 · score 1.39
25.bowang-lab / scGPT-spatial
The repository host gives no description.
+3 stars
from 141 · score 1.39
26.angelolab / ark-analysis
Integrated pipeline for multiplexed image analysis
- multiplexed-imaging
- python
+2 stars
from 108 · score 1.10