1.google-research / google-research
Google Research
+1,402 stars
from 37,710 · score 7.25
Trending repositories
Ranked by Attention Score: stars gained over the last 180 complete days
41 repositories by Attention Score · May 9, 2026 – Nov 4, 2026 (UTC)
2.Biohub / esm
The repository host gives no description.
+711 stars
from 2,304 · score 6.57
+193 stars
from 1,706 · score 5.27
+134 stars
from 3,511 · score 4.91
+122 stars
from 1,540 · score 4.81
6.mims-harvard / PrimeKG
Precision Medicine Knowledge Graph (PrimeKG)
- knowledge-graph
- precision-medicine
- therapeutics
- bioinformatics
- dataset
- graph-machine-learning
- +2 more
+95 stars
from 743 · score 4.56
7.instadeepai / nucleotide-transformer
Foundation Models for Genomics & Transcriptomics
- genomics
- deep-learning
- transformer
- dna
- foundation-models
- transcriptomics
- +1 more
+78 stars
from 859 · score 4.37
8.mahmoodlab / UNI
Pathology Foundation Model - Nature Medicine
- foundation
- foundation-model
- histopathology
- mahmoodlab
- pathology
- uni
- +11 more
+78 stars
from 719 · score 4.37
9.mlmed / torchxrayvision
TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.
- medical-imaging
- medical-ai
- deep-learning
- machine-learning
- transfer-learning
- dataset
- +13 more
+77 stars
from 1,138 · score 4.36
10.3dmol / 3Dmol.js
WebGL accelerated JavaScript molecular graphics library
- molecular-graphics
- molecular-modeling
- computational-biology
- computational-chemistry
+72 stars
from 964 · score 4.29
+55 stars
from 1,309 · score 4.03
12.kexinhuang12345 / DeepPurpose
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
- drug-repurposing
- deep-learning
- drug-target-interactions
- toolkit
- covid19
- virtual-screening
- +13 more
+49 stars
from 1,152 · score 3.91
13.songlab-cal / gpn
Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star
- dna
- language-model
- variant-effect-prediction
- genomics
+49 stars
from 338 · score 3.91
14.KangBoming / BulkFormer
BulkFormer: A large-scale foundation model for human bulk transcriptomes
+30 stars
from 57 · score 3.43
15.agemagician / ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
+28 stars
from 1,295 · score 3.37
16.biomap-research / scFoundation
The repository host gives no description.
+28 stars
from 404 · score 3.37
17.J-SNACKKB / FLIP
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
- protein
- protein-sequences
- protein-design
- representation-learning
- protein-fitness-prediction
- protein-function-prediction
+23 stars
from 121 · score 3.18
18.kexinhuang12345 / MolTrans
MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
+21 stars
from 230 · score 3.09
19.sanderlab / scPerturb
scPerturb: A resource and a python/R tool for single-cell perturbation data
+20 stars
from 172 · score 3.04
20.theislab / nicheformer
Repository for Nicheformer: a foundation model for single-cell and spatial omics
+20 stars
from 159 · score 3.04
21.cantinilab / scPRINT
🏃 The go-to single-cell Foundation Model
- batch-correction
- cell-biology
- celltype-annotation
- denoising
- embeddings
- gene-regulatory-network
- +12 more
+19 stars
from 145 · score 3.00
22.rsvp / fecon235
Notebooks for financial economics. Keywords: Jupyter notebook pandas Federal Reserve FRED Ferbus GDP CPI PCE inflation unemployment wage income debt Case-Shiller housing asset portfolio equities SPX bonds TIPS rates currency FX euro EUR USD JPY yen XAU gold Brent WTI oil Holt-Winters time-series forecasting statistics econometrics
- jupyter-notebook
- pandas
- federal-reserve
- gdp
- inflation
- housing
- +14 more
+17 stars
from 1,265 · score 2.89
23.theislab / chemCPA
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
- disentanglement
- drug-discovery
- genomics
- perturbation
- single-cell
- transfer-learning
+15 stars
from 147 · score 2.77
24.Perturbation-Response-Prediction / PRnet
PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.
+14 stars
from 78 · score 2.71
25.fastlib / fCWT
The fast Continuous Wavelet Transform (fCWT) is a library for fast calculation of CWT.
- cwt
- matlab
- cpp
- optimization
- c
- fast
- +3 more
+13 stars
from 391 · score 2.64
26.yiqunchen / GenePT
The repository host gives no description.
+13 stars
from 313 · score 2.64
27.PaddlePaddle / Quantum
The repository host gives no description.
+12 stars
from 639 · score 2.56
28.theislab / scarches
Reference mapping for single-cell genomics
- single-cell
- deep-learning
- rna-seq-analysis
- data-integration
- batch-correction
- multimodal-deep-learning
- +4 more
+12 stars
from 402 · score 2.56
29.hectornieto / pyTSEB
A python Two Source Energy Balance model for estimation of evapotranspiration with remote sensing data
- source-energy-balance
- canopy
- soil
- radiometric-temperatures
- heat
- satellite-imagery
- +1 more
+12 stars
from 160 · score 2.56
30.seyonechithrananda / bert-loves-chemistry
bert-loves-chemistry: a repository of HuggingFace models applied on chemical SMILES data for drug design, chemical modelling, etc.
- huggingface
- bert
- chemical-modelling
- chemical-smiles-data
+11 stars
from 491 · score 2.48
31.snap-stanford / SATURN
The repository host gives no description.
+11 stars
from 165 · score 2.48
32.sustainable-processes / summit
Optimising chemical reactions using machine learning
- chemistry
- machine-learning
- optimization
- bayesian-optimization
- neural-networks
- drug-discovery
- +4 more
+11 stars
from 144 · score 2.48
33.bowang-lab / scGPT-spatial
The repository host gives no description.
+10 stars
from 134 · score 2.40
34.mahmoodlab / PORPOISE
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
- histology
- wsi-images
- pan-cancer-analysis
- genomics
- mahmoodlab
+9 stars
from 243 · score 2.30
35.OmicsML / CellPLM
Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
+9 stars
from 100 · score 2.30
+8 stars
from 116 · score 2.20
37.isayev / ReLeaSE
Deep Reinforcement Learning for de-novo Drug Design
- deeplearning
- reinforcement-learning
- cheminformatics
- molecular-modeling
- drug-discovery
- qsar
+7 stars
from 368 · score 2.08
38.quantium-ai / research
Research experiments exploring uncommon quant techniques.
- analysis
- jupyter-notebook
- python
- quant
- quantitative-research
- research
- +7 more
+6 stars
from 63 · score 1.95
39.mahmoodlab / MAPS
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
- cell-annotation
- multiplexed-imaging
- mpif
+3 stars
from 64 · score 1.39
40.emptymalei / statisticalphysics
open source E-book on statistical physics
- statistical-physics
- statistical-mechanics
+2 stars
from 50 · score 1.10
41.LigandPro / Bento
UV-first benchmark for protein-ligand docking with reproducible annotation, pocket similarity, and HPC workflows.
- benchmark
- bioinformatics
- cheminformatics
- computational-chemistry
- drug-discovery
- hpc
- +6 more
+2 stars
from 11 · score 1.10