1.google-research / google-research
Google Research
+710 stars
from 38,402 · score 6.57
Trending repositories
Ranked by Attention Score: stars gained over the last 90 complete days
45 repositories by Attention Score · Aug 7, 2026 – Nov 4, 2026 (UTC)
2.Biohub / esm
The repository host gives no description.
+138 stars
from 2,877 · score 4.93
+86 stars
from 1,813 · score 4.47
+68 stars
from 3,577 · score 4.23
+56 stars
from 1,606 · score 4.04
6.3dmol / 3Dmol.js
WebGL accelerated JavaScript molecular graphics library
- molecular-graphics
- molecular-modeling
- computational-biology
- computational-chemistry
+38 stars
from 998 · score 3.66
7.mahmoodlab / UNI
Pathology Foundation Model - Nature Medicine
- foundation
- foundation-model
- histopathology
- mahmoodlab
- pathology
- uni
- +11 more
+38 stars
from 759 · score 3.66
8.mims-harvard / PrimeKG
Precision Medicine Knowledge Graph (PrimeKG)
- knowledge-graph
- precision-medicine
- therapeutics
- bioinformatics
- dataset
- graph-machine-learning
- +2 more
+37 stars
from 801 · score 3.64
9.songlab-cal / gpn
Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star
- dna
- language-model
- variant-effect-prediction
- genomics
+37 stars
from 350 · score 3.64
10.mlmed / torchxrayvision
TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.
- medical-imaging
- medical-ai
- deep-learning
- machine-learning
- transfer-learning
- dataset
- +13 more
+36 stars
from 1,179 · score 3.61
11.instadeepai / nucleotide-transformer
Foundation Models for Genomics & Transcriptomics
- genomics
- deep-learning
- transformer
- dna
- foundation-models
- transcriptomics
- +1 more
+34 stars
from 903 · score 3.56
12.kexinhuang12345 / DeepPurpose
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
- drug-repurposing
- deep-learning
- drug-target-interactions
- toolkit
- covid19
- virtual-screening
- +13 more
+30 stars
from 1,171 · score 3.43
+22 stars
from 1,342 · score 3.14
14.KangBoming / BulkFormer
BulkFormer: A large-scale foundation model for human bulk transcriptomes
+14 stars
from 73 · score 2.71
15.rsvp / fecon235
Notebooks for financial economics. Keywords: Jupyter notebook pandas Federal Reserve FRED Ferbus GDP CPI PCE inflation unemployment wage income debt Case-Shiller housing asset portfolio equities SPX bonds TIPS rates currency FX euro EUR USD JPY yen XAU gold Brent WTI oil Holt-Winters time-series forecasting statistics econometrics
- jupyter-notebook
- pandas
- federal-reserve
- gdp
- inflation
- housing
- +14 more
+13 stars
from 1,269 · score 2.64
16.biomap-research / scFoundation
The repository host gives no description.
+13 stars
from 419 · score 2.64
17.kexinhuang12345 / MolTrans
MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
+12 stars
from 239 · score 2.56
18.sanderlab / scPerturb
scPerturb: A resource and a python/R tool for single-cell perturbation data
+10 stars
from 182 · score 2.40
19.theislab / nicheformer
Repository for Nicheformer: a foundation model for single-cell and spatial omics
+10 stars
from 169 · score 2.40
20.Durenlab / LINGER
The repository host gives no description.
+10 stars
from 132 · score 2.40
21.agemagician / ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
+9 stars
from 1,314 · score 2.30
22.theislab / scarches
Reference mapping for single-cell genomics
- single-cell
- deep-learning
- rna-seq-analysis
- data-integration
- batch-correction
- multimodal-deep-learning
- +4 more
+9 stars
from 405 · score 2.30
23.cantinilab / scPRINT
🏃 The go-to single-cell Foundation Model
- batch-correction
- cell-biology
- celltype-annotation
- denoising
- embeddings
- gene-regulatory-network
- +12 more
+8 stars
from 156 · score 2.20
24.Perturbation-Response-Prediction / PRnet
PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.
+8 stars
from 84 · score 2.20
25.snap-stanford / SATURN
The repository host gives no description.
+7 stars
from 169 · score 2.08
26.theislab / chemCPA
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
- disentanglement
- drug-discovery
- genomics
- perturbation
- single-cell
- transfer-learning
+7 stars
from 155 · score 2.08
27.J-SNACKKB / FLIP
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
- protein
- protein-sequences
- protein-design
- representation-learning
- protein-fitness-prediction
- protein-function-prediction
+7 stars
from 137 · score 2.08
28.yiqunchen / GenePT
The repository host gives no description.
+6 stars
from 320 · score 1.95
29.sustainable-processes / summit
Optimising chemical reactions using machine learning
- chemistry
- machine-learning
- optimization
- bayesian-optimization
- neural-networks
- drug-discovery
- +4 more
+6 stars
from 149 · score 1.95
30.OmicsML / CellPLM
Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
+6 stars
from 103 · score 1.95
31.PaddlePaddle / Quantum
The repository host gives no description.
+5 stars
from 646 · score 1.79
32.hectornieto / pyTSEB
A python Two Source Energy Balance model for estimation of evapotranspiration with remote sensing data
- source-energy-balance
- canopy
- soil
- radiometric-temperatures
- heat
- satellite-imagery
- +1 more
+5 stars
from 167 · score 1.79
33.seyonechithrananda / bert-loves-chemistry
bert-loves-chemistry: a repository of HuggingFace models applied on chemical SMILES data for drug design, chemical modelling, etc.
- huggingface
- bert
- chemical-modelling
- chemical-smiles-data
+4 stars
from 498 · score 1.61
34.fastlib / fCWT
The fast Continuous Wavelet Transform (fCWT) is a library for fast calculation of CWT.
- cwt
- matlab
- cpp
- optimization
- c
- fast
- +3 more
+4 stars
from 400 · score 1.61
+4 stars
from 120 · score 1.61
36.isayev / ReLeaSE
Deep Reinforcement Learning for de-novo Drug Design
- deeplearning
- reinforcement-learning
- cheminformatics
- molecular-modeling
- drug-discovery
- qsar
+3 stars
from 372 · score 1.39
37.mahmoodlab / PORPOISE
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
- histology
- wsi-images
- pan-cancer-analysis
- genomics
- mahmoodlab
+3 stars
from 249 · score 1.39
38.connorcoley / rdchiral
Wrapper for RDKit's RunReactants to improve stereochemistry handling
+3 stars
from 188 · score 1.39
39.bowang-lab / scGPT-spatial
The repository host gives no description.
+3 stars
from 141 · score 1.39
40.angelolab / ark-analysis
Integrated pipeline for multiplexed image analysis
- multiplexed-imaging
- python
+2 stars
from 108 · score 1.10
41.SuperBianC / scMulan
Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
- foundation-models
- gpt
- single-cell
+2 stars
from 62 · score 1.10
42.emptymalei / statisticalphysics
open source E-book on statistical physics
- statistical-physics
- statistical-mechanics
+2 stars
from 50 · score 1.10
43.quantium-ai / research
Research experiments exploring uncommon quant techniques.
- analysis
- jupyter-notebook
- python
- quant
- quantitative-research
- research
- +7 more
+1 stars
from 68 · score 0.69
44.mahmoodlab / MAPS
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
- cell-annotation
- multiplexed-imaging
- mpif
+1 stars
from 66 · score 0.69
45.LigandPro / Bento
UV-first benchmark for protein-ligand docking with reproducible annotation, pocket similarity, and HPC workflows.
- benchmark
- bioinformatics
- cheminformatics
- computational-chemistry
- drug-discovery
- hpc
- +6 more
+1 stars
from 12 · score 0.69