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Topics: bioimage-analysis

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4 repositories by Attention Score · Oct 4, 2026 – Nov 2, 2026 (UTC)

Language: Python
Topic: bioimage-analysis
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1.stardist / stardist

StarDist - Object Detection with Star-convex Shapes

bioimage-analysis
cell-segmentation
nuclei-segmentation
object-detection
deep-learning
python

Python BSD-3-CLAUSE1.3K total286 forks

+14 stars

from 1,273 · score 2.71

2.mahmoodlab / CONCH

Vision-Language Pathology Foundation Model - Nature Medicine

bioimage-analysis
bioimage-informatics
conch
foundation-model
health-informatics
histopathology
+9 more

Python Other license541 total54 forks

+7 stars

from 534 · score 2.08

3.kreshuklab / panseg

A tool for cell instance aware segmentation in densely packed 3D volumetric images

segmentation
deep-learning
bioinformatics
neural-network
bioimage-analysis
image-segmentation
+1 more

Python MIT136 total42 forks

+6 stars

from 130 · score 1.95

4.4DNucleome / PartSeg

Tool for segmentation in bioimaging

napari
bioimage-analysis

Python BSD-3-CLAUSE39 total10 forks

+1 stars

from 38 · score 0.69

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