1.gcorso / DiffDockImplementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Dockingdiffusion-modelsdockingbindingcomputational-biologyequivariancemachine-learning+2 morePythonMIT1.6K total366 forks+99 starsfrom 1,495 · score 4.61
2.LigandPro / MatchaMulti-stage Riemannian flow matching for physically valid molecular docking, with GNINA scoring, PoseBusters filtering, CLI inference, and benchmarks.alphafold3dockingdrug-designdrug-discoveryflowmatchinggnina+8 morePythonOther license37 total4 forks+14 starsfrom 23 · score 2.71