1.gcorso / DiffDockImplementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Dockingdiffusion-modelsdockingbindingcomputational-biologyequivariancemachine-learning+2 morePythonMIT1.6K total366 forks+41 starsfrom 1,553 · score 3.74
2.LigandPro / MatchaMulti-stage Riemannian flow matching for physically valid molecular docking, with GNINA scoring, PoseBusters filtering, CLI inference, and benchmarks.alphafold3dockingdrug-designdrug-discoveryflowmatchinggnina+8 morePythonOther license37 total4 forks+5 starsfrom 32 · score 1.79