1.danforthcenter / plantcv
Plant phenotyping with image analysis
+53 stars
from 784 · score 3.99
Trending repositories
Ranked by Attention Score: stars gained over the last 180 complete days
9 repositories by Attention Score · May 7, 2026 – Nov 2, 2026 (UTC)
2.scverse / squidpy
Spatial Single Cell Analysis in Python
+50 stars
from 563 · score 3.93
3.Dana-Farber-AIOS / pathml
Tools for computational pathology
+16 stars
from 451 · score 2.83
4.cytomining / pycytominer
Python package for image-based profiling
+9 stars
from 137 · score 2.30
5.brainglobe / cellfinder
Automated 3D cell detection in very large images
+7 stars
from 225 · score 2.08
6.aelefebv / nellie
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
+5 stars
from 93 · score 1.79
7.Borda / pyImSegmArchived
Image segmentation - general superpixel segmentation & center detection & region growing
+3 stars
from 375 · score 1.39
8.ocampor / image-quality
Image quality is an open source software library for Image Quality Assessment (IQA).
+2 stars
from 433 · score 1.10
9.CellProfiler / CellProfiler-Analyst
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
+2 stars
from 170 · score 1.10