1.scverse / squidpy
Spatial Single Cell Analysis in Python
+14 stars
from 599 · score 2.71
Trending repositories
Ranked by Attention Score: stars gained over the last 30 complete days
6 repositories by Attention Score · Oct 4, 2026 – Nov 2, 2026 (UTC)
2.danforthcenter / plantcv
Plant phenotyping with image analysis
+3 stars
from 834 · score 1.39
3.Dana-Farber-AIOS / pathml
Tools for computational pathology
+3 stars
from 464 · score 1.39
4.cytomining / pycytominer
Python package for image-based profiling
+2 stars
from 144 · score 1.10
5.brainglobe / cellfinder
Automated 3D cell detection in very large images
+1 stars
from 231 · score 0.69
6.CellProfiler / CellProfiler-Analyst
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
+1 stars
from 171 · score 0.69