1.danforthcenter / plantcv
Plant phenotyping with image analysis
+26 stars
from 811 · score 3.30
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10 repositories by Attention Score · Aug 5, 2026 – Nov 2, 2026 (UTC)
2.scverse / squidpy
Spatial Single Cell Analysis in Python
+26 stars
from 587 · score 3.30
3.Dana-Farber-AIOS / pathml
Tools for computational pathology
+7 stars
from 460 · score 2.08
4.InsightSoftwareConsortium / itkwidgets
An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.
+2 stars
from 622 · score 1.10
5.brainglobe / cellfinder
Automated 3D cell detection in very large images
+2 stars
from 230 · score 1.10
6.CellProfiler / CellProfiler-Analyst
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
+2 stars
from 170 · score 1.10
7.cytomining / pycytominer
Python package for image-based profiling
+2 stars
from 144 · score 1.10
8.ocampor / image-quality
Image quality is an open source software library for Image Quality Assessment (IQA).
+1 stars
from 434 · score 0.69
9.Borda / pyImSegmArchived
Image segmentation - general superpixel segmentation & center detection & region growing
+1 stars
from 377 · score 0.69
10.aelefebv / nellie
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
+1 stars
from 97 · score 0.69