1.MouseLand / suite2p
cell detection in calcium imaging recordings
+33 stars
from 442 · score 3.53
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2.kaapana / kaapana
Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging. The name Kaapana comes from the Hawaiian word kaʻāpana, meaning "distributor" or "part".
+15 stars
from 261 · score 2.77
3.brainglobe / cellfinder
Automated 3D cell detection in very large images
+7 stars
from 225 · score 2.08
4.pycroscopy / atomai
Deep and Machine Learning for Microscopy
+3 stars
from 227 · score 1.39
5.davidbhr / CompactionAnalyzer
A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).
+1 stars
from 11 · score 0.69