1.brian-team / brian2
Brian is a free, open source simulator for spiking neural networks.
+90 stars
from 1,164 · score 4.51
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2.brainglobe / brainrender
A Python package to visualise neuroanatomical data in atlas space
+39 stars
from 643 · score 3.69
3.MouseLand / suite2p
cell detection in calcium imaging recordings
+33 stars
from 442 · score 3.53
4.brainglobe / brainglobe-atlasapi
A Python interface to access neuroanatomical atlases
+12 stars
from 178 · score 2.56
5.PytorchConnectomics / pytorch_connectomics
PyTorch Connectomics: segmentation toolbox for EM connectomics
+11 stars
from 191 · score 2.48
6.brainglobe / cellfinder
Automated 3D cell detection in very large images
+7 stars
from 225 · score 2.08
7.mrkrd / cochlea
Inner ear models for Python
+7 stars
from 123 · score 2.08
8.brainglobe / brainreg
Automated 3D brain registration with support for multiple species and atlases.
+4 stars
from 147 · score 1.61