1.brian-team / brian2Brian is a free, open source simulator for spiking neural networks. pythonneurosciencesciencedifferential-equationsspiking-neural-networksbiological-simulations+5 morePythonOther license1.3K total311 forks+14 starsfrom 1,240 · score 2.71
2.brainglobe / brainrenderA Python package to visualise neuroanatomical data in atlas spaceneurosciencepythonanatomyvisualizationPythonBSD-3-CLAUSE683 total110 forks+7 starsfrom 675 · score 2.08
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4.brainglobe / brainglobe-atlasapiA Python interface to access neuroanatomical atlasesneurosciencepythonmicroscopyregistrationvisualisationbrain+1 morePythonBSD-3-CLAUSE190 total74 forks+3 starsfrom 187 · score 1.39
5.brainglobe / cellfinderAutomated 3D cell detection in very large imagesmicroscopycell-detectiondeep-learningimage-analysisneurosciencepython+2 morePythonBSD-3-CLAUSE232 total83 forks+1 starsfrom 231 · score 0.69
6.brainglobe / brainregAutomated 3D brain registration with support for multiple species and atlases.registrationatlasesbrainneurosciencemicroscopyneuroanatomyPythonBSD-3-CLAUSE151 total37 forks+1 starsfrom 150 · score 0.69