Trending Categories Repositories Insights Dependencies Withheld

Trending Categories Repositories Insights Dependencies Withheld

Trending repositories

Ranked by Attention Score: stars gained over the last 180 complete days

Period

Sort order

Topics: scanpy

Topics

Search topics

No listed topic matches. Press Enter to filter by “”.

Category

Filters (1)

Apply

Filters

Primary language

License

Total stars

Last push

Created

Archived

Clear all filters

3 repositories by Attention Score · May 7, 2026 – Nov 2, 2026 (UTC)

Language: Python
Topic: scanpy
Clear all

1.cafferychen777 / ChatSpatial

MCP server for spatial transcriptomics analysis through natural language interfaces.

bioinformatics
cell-communication
deconvolution
machine-learning
python
single-cell
+14 more

Python MIT45 total14 forks

+13 stars

from 32 · score 2.64

2.cafferychen777 / flashdeconv

Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics

bioinformatics
cell-type-deconvolution
computational-biology
deconvolution
python
scanpy
+3 more

Python BSD-3-CLAUSE26 total0 forks

+9 stars

from 17 · score 2.30

3.theislab / ncem

Learning cell communication from spatial graphs of cells

tensorflow
gnn
glm
cvae
encoder-decoder-model
scanpy
+3 more

Python BSD-3-CLAUSE121 total13 forks

+5 stars

from 116 · score 1.79

Order: Attention Score

Most net stars gained in the window first. The score only puts this gain on a log scale, so the order is the order of the gain.

How the ranking works

Ranked by stars gained in the window. The score is the natural log of one plus that gain, so a repository's rank is exactly its star gain's rank.

score = log1p(net stars gained in the trailing T complete UTC days)

A repository is ranked only when its Star History covers every day of the window and its latest Observation is not missing.

The longest window is 180 days. Star History from the Repository Host goes back at most 180 days before a repository's first Observation. A longer window needs more days of Observations first. A repository younger than the window is not ranked in it.

The filters narrow the same eligible repositories. A repository matches the topics when it has any of them. Total stars is the count now. Last push and creation on the Repository Host count back from the start of today (UTC). The counts beside the languages, licenses, and topics include all ranked repositories in the window. A Category holds the repositories that its published rules match; see Categories.

Repositories enter the index from the Seed Dataset or by gaining stars faster than the published admission threshold, whatever their size. Admission is permanent, so an archived repository can still rank.

Browse the Repository Index

Trending Categories Repositories Insights Dependencies Withheld Withholding Rule Privacy Send feedback