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Topics: scanpy

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4 repositories by Attention Score · Aug 5, 2026 – Nov 2, 2026 (UTC)

Language: Python
Topic: scanpy
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1.ElliotXie / autozyme

Autonomous multi-agent framework to optimize scientific software

acceleration
agentic-ai
ai-agents
bioinformatics
code-optimization
genomics
+11 more

Python MIT57 total4 forks

+15 stars

from 42 · score 2.77

2.cafferychen777 / ChatSpatial

MCP server for spatial transcriptomics analysis through natural language interfaces.

bioinformatics
cell-communication
deconvolution
machine-learning
python
single-cell
+14 more

Python MIT45 total14 forks

+4 stars

from 41 · score 1.61

3.cafferychen777 / flashdeconv

Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics

bioinformatics
cell-type-deconvolution
computational-biology
deconvolution
python
scanpy
+3 more

Python BSD-3-CLAUSE26 total0 forks

+4 stars

from 22 · score 1.61

4.theislab / ncem

Learning cell communication from spatial graphs of cells

tensorflow
gnn
glm
cvae
encoder-decoder-model
scanpy
+3 more

Python BSD-3-CLAUSE121 total13 forks

+1 stars

from 120 · score 0.69

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