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Topics: single-cell

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5 repositories by Attention Score · May 7, 2026 – Nov 2, 2026 (UTC)

Language: Python
Topic: single-cell
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1.Teichlab / celltypist

A tool for semi-automatic cell type classification

python
single-cell
machine-learning
scrna-seq
cell-type-classification
label-transfer

Python MIT517 total61 forks

+45 stars

from 472 · score 3.83

2.gao-lab / GLUE

Graph-linked unified embedding for single-cell multi-omics data integration

bioinformatics
deep-learning
single-cell
single-cell-multiomics

Python MIT483 total74 forks

+21 stars

from 462 · score 3.09

3.ElliotXie / CASSIA

CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework

ai4science
llm
multiagent-systems
prompt-engineering
retrieved-augmented-generation
singlecell
+7 more

Python MIT109 total9 forks

+21 stars

from 88 · score 3.09

4.cafferychen777 / ChatSpatial

MCP server for spatial transcriptomics analysis through natural language interfaces.

bioinformatics
cell-communication
deconvolution
machine-learning
python
single-cell
+14 more

Python MIT45 total14 forks

+13 stars

from 32 · score 2.64

5.cafferychen777 / flashdeconv

Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics

bioinformatics
cell-type-deconvolution
computational-biology
deconvolution
python
scanpy
+3 more

Python BSD-3-CLAUSE26 total0 forks

+9 stars

from 17 · score 2.30

Order: Attention Score

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Ranked by stars gained in the window. The score is the natural log of one plus that gain, so a repository's rank is exactly its star gain's rank.

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The longest window is 180 days. Star History from the Repository Host goes back at most 180 days before a repository's first Observation. A longer window needs more days of Observations first. A repository younger than the window is not ranked in it.

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