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Topics: single-cell

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6 repositories by Attention Score · Oct 4, 2026 – Nov 2, 2026 (UTC)

Language: Python
Topic: single-cell
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1.Teichlab / celltypist

A tool for semi-automatic cell type classification

python
single-cell
machine-learning
scrna-seq
cell-type-classification
label-transfer

Python MIT517 total61 forks

+9 stars

from 508 · score 2.30

2.ElliotXie / autozyme

Autonomous multi-agent framework to optimize scientific software

acceleration
agentic-ai
ai-agents
bioinformatics
code-optimization
genomics
+11 more

Python MIT57 total4 forks

+6 stars

from 51 · score 1.95

3.gao-lab / GLUE

Graph-linked unified embedding for single-cell multi-omics data integration

bioinformatics
deep-learning
single-cell
single-cell-multiomics

Python MIT483 total74 forks

+3 stars

from 480 · score 1.39

4.ElliotXie / CASSIA

CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework

ai4science
llm
multiagent-systems
prompt-engineering
retrieved-augmented-generation
singlecell
+7 more

Python MIT109 total9 forks

+2 stars

from 107 · score 1.10

5.cafferychen777 / ChatSpatial

MCP server for spatial transcriptomics analysis through natural language interfaces.

bioinformatics
cell-communication
deconvolution
machine-learning
python
single-cell
+14 more

Python MIT45 total14 forks

+1 stars

from 44 · score 0.69

6.cafferychen777 / flashdeconv

Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics

bioinformatics
cell-type-deconvolution
computational-biology
deconvolution
python
scanpy
+3 more

Python BSD-3-CLAUSE26 total0 forks

+1 stars

from 25 · score 0.69

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