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Topics: single-cell

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6 repositories by Attention Score · Aug 5, 2026 – Nov 2, 2026 (UTC)

Language: Python
Topic: single-cell
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1.Teichlab / celltypist

A tool for semi-automatic cell type classification

python
single-cell
machine-learning
scrna-seq
cell-type-classification
label-transfer

Python MIT517 total61 forks

+17 stars

from 500 · score 2.89

2.ElliotXie / autozyme

Autonomous multi-agent framework to optimize scientific software

acceleration
agentic-ai
ai-agents
bioinformatics
code-optimization
genomics
+11 more

Python MIT57 total4 forks

+15 stars

from 42 · score 2.77

3.gao-lab / GLUE

Graph-linked unified embedding for single-cell multi-omics data integration

bioinformatics
deep-learning
single-cell
single-cell-multiomics

Python MIT483 total74 forks

+10 stars

from 473 · score 2.40

4.ElliotXie / CASSIA

CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework

ai4science
llm
multiagent-systems
prompt-engineering
retrieved-augmented-generation
singlecell
+7 more

Python MIT109 total9 forks

+9 stars

from 100 · score 2.30

5.cafferychen777 / ChatSpatial

MCP server for spatial transcriptomics analysis through natural language interfaces.

bioinformatics
cell-communication
deconvolution
machine-learning
python
single-cell
+14 more

Python MIT45 total14 forks

+4 stars

from 41 · score 1.61

6.cafferychen777 / flashdeconv

Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics

bioinformatics
cell-type-deconvolution
computational-biology
deconvolution
python
scanpy
+3 more

Python BSD-3-CLAUSE26 total0 forks

+4 stars

from 22 · score 1.61

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