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Topics: spatial-transcriptomics

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5 repositories by Attention Score · Aug 5, 2026 – Nov 2, 2026 (UTC)

Language: Python
Topic: spatial-transcriptomics
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1.scverse / squidpy

Spatial Single Cell Analysis in Python

single-cell-rna-seq
single-cell-genomics
spatial-transcriptomics
spatial-analysis
image-analysis
data-visualization
+2 more

Python BSD-3-CLAUSE613 total128 forks

+26 stars

from 587 · score 3.30

2.ElliotXie / autozyme

Autonomous multi-agent framework to optimize scientific software

acceleration
agentic-ai
ai-agents
bioinformatics
code-optimization
genomics
+11 more

Python MIT57 total4 forks

+15 stars

from 42 · score 2.77

3.Dana-Farber-AIOS / pathml

Tools for computational pathology

machine-learning
digital-pathology
computational-pathology
biomedical-image-processing
pathology
histopathology
+9 more

Python GPL-2.0467 total87 forks

+7 stars

from 460 · score 2.08

4.cafferychen777 / ChatSpatial

MCP server for spatial transcriptomics analysis through natural language interfaces.

bioinformatics
cell-communication
deconvolution
machine-learning
python
single-cell
+14 more

Python MIT45 total14 forks

+4 stars

from 41 · score 1.61

5.cafferychen777 / flashdeconv

Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics

bioinformatics
cell-type-deconvolution
computational-biology
deconvolution
python
scanpy
+3 more

Python BSD-3-CLAUSE26 total0 forks

+4 stars

from 22 · score 1.61

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