+20 stars
from 411 · score 3.04
Trending repositories
Ranked by Attention Score: stars gained over the last 90 complete days
10 repositories by Attention Score · Aug 7, 2026 – Nov 4, 2026 (UTC)
2.chris-mcginnis-ucsf / DoubletFinder
R package for detecting doublets in single-cell RNA sequencing data
+17 stars
from 557 · score 2.89
3.immunogenomics / harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
+11 stars
from 663 · score 2.48
4.kharchenkolab / numbat
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
- cancer-genomics
- cnv-detection
- single-cell
- phylogeny
- single-cell-analysis
- single-cell-rna-seq
- +4 more
+8 stars
from 225 · score 2.20
5.YuLab-SMU / ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
- r
- visualization
- phylogenetic-trees
- annotations
- ggplot2
+6 stars
from 929 · score 1.95
6.spatstat / spatstat
Umbrella package of the 'spatstat' family................
- r
- spatial-analysis
- spatial-data
- spatstat
- spatial-data-analysis
- statistics
- +11 more
+3 stars
from 206 · score 1.39
+2 stars
from 219 · score 1.10
8.sqjin / CellChatArchived
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
- cell-cell-communication
- single-cell-analysis
- cell-cell-interaction
- microenvironment
+1 stars
from 788 · score 0.69
+1 stars
from 91 · score 0.69
10.natverse / nat
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
- r
- neuroanatomy-toolbox
- cran
- neuron
- neuroscience
- 3d
- +5 more
+1 stars
from 78 · score 0.69