+325 stars
from 8,401 · score 5.79
Trending repositories
Ranked by Attention Score: stars gained over the last 90 complete days
17 repositories by Attention Score · Aug 7, 2026 – Nov 4, 2026 (UTC)
+201 stars
from 14,727 · score 5.31
3.evo-design / evo
Biological foundation modeling from molecular to genome scale
+53 stars
from 1,534 · score 3.99
4.aqlaboratory / openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
- pytorch
- protein-structure
- alphafold2
+45 stars
from 3,407 · score 3.83
5.chaidiscovery / chai-lab
Chai-1, SOTA model for biomolecular structure prediction
+37 stars
from 1,971 · score 3.64
6.biomap-research / scFoundation
The repository host gives no description.
+13 stars
from 419 · score 2.64
7.jerryji1993 / DNABERT
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
- kmer
- dnabert-model
- kmer-format
- gpu
- sequence
- genome
- +4 more
+12 stars
from 771 · score 2.56
8.MAGICS-LAB / DNABERT_2
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
- dataset
- dna
- dna-processing
- dna-training
- genome
- genome-analysis
- +10 more
+11 stars
from 508 · score 2.48
9.calico / borzoi
RNA-seq prediction with deep convolutional neural networks.
+10 stars
from 259 · score 2.40
10.HazyResearch / hyena-dna
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
- foundation-models
- genomics
- language-models
+9 stars
from 797 · score 2.30
11.Perturbation-Response-Prediction / PRnet
PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.
+8 stars
from 84 · score 2.20
+6 stars
from 623 · score 1.95
13.bigdatagenomics / adam
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
- spark
- big-data
- bioinformatics
- genomics
- parquet
- avro
- +4 more
+5 stars
from 1,054 · score 1.79
14.calico / basenji
Sequential regulatory activity predictions with deep convolutional neural networks.
+5 stars
from 473 · score 1.79
15.kuleshov-group / caduceus
Bi-Directional Equivariant Long-Range DNA Sequence Modeling
+5 stars
from 248 · score 1.79
16.awslabs / dgl-lifesci
Python package for graph neural networks in chemistry and biology
- deep-learning
- graph-neural-networks
- dgl
- cheminformatics
- bioinformatics
- geometric-deep-learning
- +2 more
+4 stars
from 807 · score 1.61
17.lifanchen-simm / transformerCPI
TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524
- self-attention
- compound-protein-interaction
- transformercpi
- structure-free-virtual-sreening
- drug-target-identification
- drug-discovery
+3 stars
from 156 · score 1.39