+596 stars
from 14,589 · score 6.39
Trending repositories
Ranked by Attention Score: stars gained over the last 180 complete days
57 repositories by Attention Score · May 9, 2026 – Nov 4, 2026 (UTC)
2.projectchrono / chrono
High-performance C++ library for multiphysics and multibody dynamics simulations
- simulation
- physics-simulation
- modeling
- robotics
- physics-engine
- multibody-dynamics
- +4 more
+328 stars
from 2,813 · score 5.80
3.OpenMathLib / OpenBLAS
OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
- blas
- lapack
- lapacke
+289 stars
from 7,374 · score 5.67
+283 stars
from 5,126 · score 5.65
+259 stars
from 3,407 · score 5.56
6.pvlib / pvlib-python
A set of documented functions for simulating the performance of photovoltaic energy systems.
- solar-energy
- python
- renewable-energy
- renewables
- photovoltaic
+167 stars
from 1,547 · score 5.12
7.mfem / mfem
Lightweight, general, scalable C++ library for finite element methods
- finite-elements
- high-order
- high-performance-computing
- parallel-computing
- amr
- computational-science
- +5 more
+134 stars
from 2,151 · score 4.91
8.gonum / gonum
Gonum is a set of numeric libraries for the Go programming language. It contains libraries for matrices, statistics, optimization, and more
- go
- golang
- scientific-computing
- data-analysis
- matrix
- statistics
- +1 more
+125 stars
from 8,330 · score 4.84
9.shapely / shapely
Manipulation and analysis of geometric objects
+115 stars
from 4,422 · score 4.75
10.scverse / scvi-tools
Deep probabilistic analysis of single-cell and spatial omics data
- scrna-seq
- variational-bayes
- variational-autoencoder
- cite-seq
- single-cell-genomics
- single-cell-rna-seq
- +4 more
+112 stars
from 1,608 · score 4.73
11.qutip / qutip
QuTiP: Quantum Toolbox in Python
- qutip
- python
- quantum-toolbox
- quantum
- quantum-computing
- quantum-mechanics
- +3 more
+101 stars
from 1,994 · score 4.62
12.koide3 / fast_gicp
A collection of GICP-based fast point cloud registration algorithms
+77 stars
from 1,627 · score 4.36
13.X-DataInitiative / tick
Module for statistical learning, with a particular emphasis on time-dependent modelling
- machine-learning
- python
- point-process
- optimization
- modelling
- statistics
+69 stars
from 544 · score 4.25
+55 stars
from 618 · score 4.03
15.xtensor-stack / xtensor
C++ tensors with broadcasting and lazy computing
- c-plus-plus-14
- numpy
- multidimensional-arrays
- tensors
- c-plus-plus-17
- c-plus-plus-20
- +1 more
+52 stars
from 3,718 · score 3.97
16.ahmedfgad / GeneticAlgorithmPython
Source code of PyGAD, a Python 3 library for building the genetic algorithm and training machine learning algorithms (Keras & PyTorch).
- python
- genetic-algorithm
- optimization
- numpy
- pygad
- pygad-documentation
- +4 more
+51 stars
from 2,183 · score 3.95
17.kexinhuang12345 / DeepPurpose
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
- drug-repurposing
- deep-learning
- drug-target-interactions
- toolkit
- covid19
- virtual-screening
- +13 more
+49 stars
from 1,152 · score 3.91
18.scverse / squidpy
Spatial Single Cell Analysis in Python
- single-cell-rna-seq
- single-cell-genomics
- spatial-transcriptomics
- spatial-analysis
- image-analysis
- data-visualization
- +2 more
+49 stars
from 563 · score 3.91
19.arrayfire / arrayfire
ArrayFire: a general purpose GPU library.
+41 stars
from 4,867 · score 3.74
20.ginkgo-project / ginkgo
Numerical linear algebra software package
- linear-algebra
- hpc
- gpu-computing
- cuda
- krylov-methods
- preconditioning
- +6 more
+38 stars
from 592 · score 3.66
21.NVIDIA / MatX
An efficient C++20 GPU numerical computing library with Python-like syntax
+37 stars
from 1,414 · score 3.64
22.CSOgroup / cellcharter
A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
+32 stars
from 172 · score 3.50
23.cclib / cclib
Parsers and algorithms for computational chemistry logfiles
- python
- computational-chemistry
- quantum-chemistry
+29 stars
from 404 · score 3.40
24.jwiegley / category-theory
An axiom-free formalization of category theory in Coq for personal study and practical work
- category-theory
- coq
- monad
- profunctor
- comonads
- monoid
- +7 more
+23 stars
from 796 · score 3.18
25.weigertlab / spotiflow
Accurate and efficient spot detection for microscopy data
+23 stars
from 125 · score 3.18
26.broadinstitute / cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
- workflow-execution
- workflow
- cloud
- hpc
- bioinformatics
- executor
- +7 more
+22 stars
from 1,061 · score 3.14
27.kexinhuang12345 / MolTrans
MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
+21 stars
from 230 · score 3.09
28.mreineck / pocketfft
Fork of https://gitlab.mpcdf.mpg.de/mtr/pocketfft to simplify external contributions
+21 stars
from 141 · score 3.09
29.theislab / scvelo
RNA Velocity generalized through dynamical modeling
+20 stars
from 494 · score 3.04
30.quagmt / udecimal
A high-performance, high precision, zero allocation fixed-point decimal library for financial applications
- golang
- high-performance
- zero-allocation
- money
- go
- financial
- +2 more
+20 stars
from 180 · score 3.04
31.theislab / nicheformer
Repository for Nicheformer: a foundation model for single-cell and spatial omics
+20 stars
from 159 · score 3.04
32.scikit-optimize / scikit-optimizeArchived
Sequential model-based optimization with a `scipy.optimize` interface
- bayesopt
- optimization
- scientific-computing
- machine-learning
- hyperparameter
- bayesian-optimization
- +9 more
+18 stars
from 2,813 · score 2.94
33.python-adaptive / adaptive
:chart_with_upwards_trend: Adaptive: parallel active learning of mathematical functions
- adaptive-learning
- machine-learning
- python
- live-plots
- parallel-computing
- adaptive-sampling
- +3 more
+17 stars
from 1,215 · score 2.89
34.mordred-descriptor / mordred
a molecular descriptor calculator
+17 stars
from 469 · score 2.89
35.cpmech / gosl
Linear algebra, eigenvalues, FFT, Bessel, elliptic, orthogonal polys, geometry, NURBS, numerical quadrature, 3D transfinite interpolation, random numbers, Mersenne twister, probability distributions, optimisation, differential equations.
- scientific-computing
- linear-algebra
- differential-equations
- sparse-systems
- parallel-computations
- computational-geometry
- +6 more
+16 stars
from 1,870 · score 2.83
36.ruby-numo / numo-narray
Ruby/Numo::NArray - New NArray class library
- numo
- narray
- ruby
- ruby-numo
- scientific-computing
+13 stars
from 456 · score 2.64
37.theislab / scarches
Reference mapping for single-cell genomics
- single-cell
- deep-learning
- rna-seq-analysis
- data-integration
- batch-correction
- multimodal-deep-learning
- +4 more
+12 stars
from 402 · score 2.56
38.brainglobe / brainglobe-atlasapi
A Python interface to access neuroanatomical atlases
- neuroscience
- python
- microscopy
- registration
- visualisation
- brain
- +1 more
+12 stars
from 178 · score 2.56
+11 stars
from 697 · score 2.48
40.songlab-cal / tape
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
- deep-learning
- protein-sequences
- protein-structure
- semi-supervised-learning
- benchmark
- language-modeling
- +2 more
+10 stars
from 736 · score 2.40
+9 stars
from 408 · score 2.30
42.cytomining / pycytominer
Python package for image-based profiling
- cytominer
- microscopy
- morphological-profiling
- python
- cellprofiler
- image-analysis
- +1 more
+9 stars
from 137 · score 2.30
43.cafferychen777 / flashdeconv
Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics
- bioinformatics
- cell-type-deconvolution
- computational-biology
- deconvolution
- python
- scanpy
- +3 more
+9 stars
from 17 · score 2.30
44.glumpy / glumpy
Python+Numpy+OpenGL: fast, scalable and beautiful scientific visualization
+8 stars
from 1,271 · score 2.20
45.Kcnarf / d3-voronoi-treemap
D3 plugin which computes a treemap based on a Voronoi tesselation
+8 stars
from 218 · score 2.20
46.hachmannlab / chemml
ChemML is a machine learning and informatics program suite for the chemical and materials sciences.
- quantum-mechanics
- materials-informatics
- data-science
- machine-learning
- drug-discovery
- deep-learning
+8 stars
from 172 · score 2.20
+7 stars
from 602 · score 2.08
48.samoturk / mol2vecArchived
Mol2vec - an unsupervised machine learning approach to learn vector representations of molecular substructures
- python
- machine-learning
- cheminformatics
+7 stars
from 287 · score 2.08
49.brainglobe / cellfinder
Automated 3D cell detection in very large images
- microscopy
- cell-detection
- deep-learning
- image-analysis
- neuroscience
- python
- +2 more
+7 stars
from 226 · score 2.08
50.brainglobe / brainreg
Automated 3D brain registration with support for multiple species and atlases.
- registration
- atlases
- brain
- neuroscience
- microscopy
- neuroanatomy
+5 stars
from 147 · score 1.79
51.CSBDeep / CSBDeep
Image restoration for fluorescence microscopy
+4 stars
from 332 · score 1.61
52.pbrod / numdifftools
Solve automatic numerical differentiation problems in one or more variables.
+3 stars
from 280 · score 1.39
+3 stars
from 253 · score 1.39
54.woodcrafty / PyETo
Python package for calculating reference/potential evapotranspiration (ETo).
+3 stars
from 176 · score 1.39
55.blender-nlp / MolT5
Associated Repository for "Translation between Molecules and Natural Language"
+2 stars
from 193 · score 1.10
56.theislab / multigrate
Multigrate: multiomic data integration for single-cell genomics
+2 stars
from 33 · score 1.10
+1 stars
from 138 · score 0.69