1.aertslab / SCENIC
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
+8 stars
from 493 · score 2.20
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2.cantinilab / scPRINT
🏃 The go-to single-cell Foundation Model
- batch-correction
- cell-biology
- celltype-annotation
- denoising
- embeddings
- gene-regulatory-network
- +12 more
+8 stars
from 156 · score 2.20
3.TencentAILabHealthcare / scBERT
The repository host gives no description.
+6 stars
from 358 · score 1.95
4.morphonets / SNT
The framework for quantification of neuronal anatomy
- neuroscience
- neuroanatomy-toolbox
- imagej
- imagej2
- scijava
- neurons
- +3 more
+5 stars
from 59 · score 1.79
5.luoyunan / DTINet
A Network Integration Approach for Drug-Target Interaction Prediction
+4 stars
from 189 · score 1.61
6.mahmoodlab / PORPOISE
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
- histology
- wsi-images
- pan-cancer-analysis
- genomics
- mahmoodlab
+3 stars
from 249 · score 1.39
7.sqjin / CellChatArchived
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
- cell-cell-communication
- single-cell-analysis
- cell-cell-interaction
- microenvironment
+1 stars
from 788 · score 0.69