1.xxPcy / PharmaLLM-Agent
Medical LLM agent and MRI segmentation workspace built on PharmaLLM, with LangGraph, vLLM, and BEU-Net.
+123 stars
from 78 · score 4.82
Trending repositories
Ranked by Attention Score: stars gained over the last 7 complete days
81 repositories by Attention Score · Oct 30, 2026 – Nov 5, 2026 (UTC)
+93 stars
from 28,973 · score 4.54
3.ntfargo / Relapse-Exploit
Exploit chain for PS5 7.00 - 13.60
+52 stars
from 2,606 · score 3.97
+35 stars
from 466 · score 3.58
5.PavelDoGreat / WebGL-Fluid-Simulation
Play with fluids in your browser (works even on mobile)
- fluid
- webgl
- simulation
- gpu
- navier-stokes
+27 stars
from 16,774 · score 3.33
6.deepchem / deepchem
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
- drug-discovery
- quantum-chemistry
- deep-learning
- biology
- materials-science
- hacktoberfest
+19 stars
from 7,106 · score 3.00
7.jwohlwend / boltz
Official repository for the Boltz biomolecular interaction models
- binding-prediction
- drug-discovery
- protein-structure
+13 stars
from 4,281 · score 2.64
8.OHIF / Viewers
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
- nci-itcr
- nci-qin
- quantitative-imaging
- imaging-informatics
- cancer-imaging-research
- dicom
- +10 more
+12 stars
from 4,390 · score 2.56
9.pyvista / pyvista
3D visualization and mesh analysis for science and engineering
- vtk
- python
- visualization
- 3d
- meshviewer
- scientific-visualization
- +6 more
+11 stars
from 3,867 · score 2.48
10.Turfjs / turf
A modular geospatial engine written in JavaScript and TypeScript
- javascript
- algorithm
- computational-geometry
- geojson
- turf
- gis
- +3 more
+10 stars
from 10,525 · score 2.40
11.gcorso / DiffDock
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
- diffusion-models
- docking
- binding
- computational-biology
- equivariance
- machine-learning
- +2 more
+9 stars
from 1,590 · score 2.30
+7 stars
from 2,277 · score 2.08
+6 stars
from 12,388 · score 1.95
14.boyter / scc
Sloc, Cloc and Code: scc is a very fast accurate code counter with complexity calculations and COCOMO estimates written in pure Go
+5 stars
from 8,855 · score 1.79
+5 stars
from 3,641 · score 1.79
+5 stars
from 2,833 · score 1.79
+5 stars
from 1,894 · score 1.79
18.HIPS / autograd
Efficiently computes derivatives of NumPy code.
- autograd
- automatic-differentiation
- numpy
- python
- deep-learning
- derivative
- +8 more
+4 stars
from 7,548 · score 1.61
19.dpilger26 / NumCpp
C++ implementation of the Python Numpy library
- python
- numpy
- c-plus-plus
- numerical-analysis
- scientific-computing
- algorithms
- +3 more
+4 stars
from 3,965 · score 1.61
20.zarr-developers / zarr-python
An implementation of chunked, compressed, N-dimensional arrays for Python.
- zarr
- ndimensional-arrays
- compressed
- python
+4 stars
from 2,079 · score 1.61
21.owlbarn / owl
Owl - OCaml Scientific Computing @ https://ocaml.xyz
- matrix
- linear-algebra
- ndarray
- statistical-functions
- topic-modeling
- regression
- +14 more
+4 stars
from 1,355 · score 1.61
22.chainer / chainer-chemistry
Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry
- deep-learning
- chemistry
- neural-network
- biology
- chainer
- python
- +1 more
+4 stars
from 712 · score 1.61
23.gao-lab / GLUE
Graph-linked unified embedding for single-cell multi-omics data integration
- bioinformatics
- deep-learning
- single-cell
- single-cell-multiomics
+4 stars
from 483 · score 1.61
24.snap-stanford / GEARS
GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
+4 stars
from 420 · score 1.61
25.aidenybai / million
Optimizing compiler for React
- hacktoberfest
- million
- millionjs
- virtual-dom
- react
- blockdom
- +11 more
+3 stars
from 17,661 · score 1.39
26.suyashkumar / dicom
⚡High Performance DICOM Medical Image Parser in Go.
- dicom
- dicom-images
- golang
- golang-library
- golang-package
- parser
- +10 more
+3 stars
from 1,094 · score 1.39
27.ddemidov / amgcl
C++ library for solving large sparse linear systems with algebraic multigrid method
- amg
- c-plus-plus
- sparse-linear-systems
- opencl
- cuda
- gpgpu
- +6 more
+3 stars
from 883 · score 1.39
28.Mariewelt / OpenChem
OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research
- computational-chemistry
- computational-biology
- deep-learning
- deep-neural-networks
- graph-convolutional-networks
- drug-discovery
- +5 more
+3 stars
from 758 · score 1.39
+3 stars
from 735 · score 1.39
30.TUDelft-CNS-ATM / bluesky
The open source air traffic simulator
- python
- traffic
- aircraft
- simulation
- air-traffic-control
- air-transport
- +11 more
+3 stars
from 574 · score 1.39
31.OATML-Markslab / ProteinGym
Official repository for the ProteinGym benchmarks
- benchmark
- computational-biology
- protein
- protein-design
- protein-fitness
+3 stars
from 481 · score 1.39
32.dan2097 / opsin
Open Parser for Systematic IUPAC Nomenclature. Chemical name to structure conversion
+3 stars
from 244 · score 1.39
33.mikedh / trimesh
Python library for loading and using triangular meshes.
- mesh
- triangular-meshes
- geometry
- python
+2 stars
from 3,714 · score 1.10
34.markrogoyski / math-php
Powerful modern math library for PHP: Features descriptive statistics and regressions; Continuous and discrete probability distributions; Linear algebra with matrices and vectors, Numerical analysis; special mathematical functions; Algebra
- math
- mathematics
- linear-algebra
- statistics
- matrix
- probability
- +11 more
+2 stars
from 2,414 · score 1.10
35.RosettaCommons / RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
+2 stars
from 2,279 · score 1.10
36.Aceinna / gnss-ins-sim
Open-source GNSS + inertial navigation, sensor fusion simulator. Motion trajectory generator, sensor models, and navigation
- inertial-navigation-systems
- gnss
- gps
- imu
- integrated-navigation
+2 stars
from 1,496 · score 1.10
37.deepmodeling / Uni-Mol
Official Repository for the Uni-Mol Series Methods
- molecular-modeling
- pre-trained-model
- pretraining
- deep-learning
+2 stars
from 1,175 · score 1.10
38.mims-harvard / PrimeKG
Precision Medicine Knowledge Graph (PrimeKG)
- knowledge-graph
- precision-medicine
- therapeutics
- bioinformatics
- dataset
- graph-machine-learning
- +2 more
+2 stars
from 837 · score 1.10
39.vcflib / vcflib
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
- variant-calling
- genomics
- vcf-manipulation
- genotyping
- haplotypecaller
+2 stars
from 687 · score 1.10
+2 stars
from 536 · score 1.10
41.MFlowCode / MFC
Exascale multiphase flow solver — 2025 Gordon Bell Prize Finalist | 200T grid points on 43K+ GPUs
+2 stars
from 437 · score 1.10
42.shmlkv / dna-claude-analysis
Run scripts, explore your genome, and get personalized explanations — all in natural dialogue.
- analysis
- claude
- claudecode
- dna
- genome
+2 stars
from 58 · score 1.10
43.bayesian-optimization / BayesianOptimization
A Python implementation of global optimization with gaussian processes.
- optimization
- gaussian-processes
- bayesian-optimization
- python
- simple
+1 stars
from 8,728 · score 0.69
+1 stars
from 3,774 · score 0.69
45.PythonOT / POT
POT : Python Optimal Transport
- optimal-transport
- numerical-optimization
- machine-learning
- emd
- ot-mapping-estimation
- wasserstein-barycenter
- +10 more
+1 stars
from 2,860 · score 0.69
46.DavidArayan / ezy-slice
An open source mesh slicer framework for Unity3D Game Engine. Written in C#.
+1 stars
from 2,280 · score 0.69
47.marcomusy / vedo
A python module for scientific analysis of 3D data based on VTK and Numpy
- 3d-graphics
- vtk
- 3d
- mesh
- simulations
- scientific-visualization
- +5 more
+1 stars
from 2,274 · score 0.69
48.brick / math
Arbitrary-precision arithmetic library for PHP
- php
- arbitrary-precision
- biginteger
- bigdecimal
- bigrational
- gmp
- +1 more
+1 stars
from 2,179 · score 0.69
49.microsoft / DirectXMath
DirectXMath is an all inline SIMD C++ linear algebra library for use in games and graphics apps
+1 stars
from 1,816 · score 0.69
50.DTolm / VkFFT
Vulkan/CUDA/HIP/OpenCL/Level Zero/Metal Fast Fourier Transform library
+1 stars
from 1,786 · score 0.69
+1 stars
from 1,662 · score 0.69
52.pmp-library / pmp-library
The Polygon Mesh Processing Library
- mesh-processing
- geometry-processing
- polygon-mesh
- triangle-mesh
- c-plus-plus
- surface-mesh
- +9 more
+1 stars
from 1,509 · score 0.69
53.kzampog / cilantro
A lean C++ library for working with point cloud data
- point-cloud
- icp
- ransac
- convex-hull
- 3d-visualization
- k-means
- +14 more
+1 stars
from 1,138 · score 0.69
54.hail-is / hail
Cloud-native genomic dataframes and batch computing
- genetics
- vcf
- genomics
- gwas
- bioinformatics
- python
- +2 more
+1 stars
from 1,081 · score 0.69
55.molecularsets / moses
Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models
- machine-learning
- generative-models
- drug-discovery
- benchmark
+1 stars
from 996 · score 0.69
56.romeric / Fastor
A lightweight high performance tensor algebra framework for modern C++
+1 stars
from 844 · score 0.69
+1 stars
from 818 · score 0.69
58.vqdang / hover_net
Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.
+1 stars
from 756 · score 0.69
59.softwareQinc / qpp
Modern C++ quantum computing library
- quantum-computing
- c-plus-plus
- cpp
- cpp11
- quantum
- simulator
- +2 more
+1 stars
from 677 · score 0.69
60.pyamg / pyamg
Algebraic Multigrid Solvers in Python
- amg
- solver
- python
- multigrid
- sparse-matrix
- pyamg
- +2 more
+1 stars
from 661 · score 0.69
61.microsoft / QuantumLibrariesArchived
Q# libraries for the Quantum Development Kit
- qsharp
- qdk
- quantum
- quantum-development-kit
- quantum-computing
- hacktoberfest
+1 stars
from 573 · score 0.69
62.pathsim / pathsim
A Python native dynamical system simulation framework in the block diagram paradigm.
- blockdiagram
- control-systems
- hierarchical-modeling
- nonlinear-dynamics
- simulation
- system-simulation
- +14 more
+1 stars
from 512 · score 0.69
63.v923z / micropython-ulab
a numpy-like fast vector module for micropython, circuitpython, and their derivatives
- micropython-ulab
- numpy
- micropython
- module
- circuitpython
- openmv
- +5 more
+1 stars
from 502 · score 0.69
64.shenwei356 / taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
- bioinformatics
- taxonomy
- cross-platform
- lineage
- lca
- taxid
- +2 more
+1 stars
from 483 · score 0.69
65.brandon-rhodes / python-sgp4
Python version of the SGP4 satellite position library
+1 stars
from 480 · score 0.69
66.MolSSI / cookiecutter-cms
Python-centric Cookiecutter for Molecular Computational Chemistry Packages
- cookiecutter
- python-packages
- molecular-sciences
- conda-environment
- pytest
- conda-forge
- +2 more
+1 stars
from 465 · score 0.69
+1 stars
from 435 · score 0.69
68.vlang / vsl
V library to develop Artificial Intelligence and High-Performance Scientific Computations
- v
- hacktoberfest
- linear-algebra
- optimization
- sparse-systems
- computational-geometry
- +7 more
+1 stars
from 405 · score 0.69
69.hms-dbmi / viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
- hubmap
- imaging
- openmicroscopy
- ome-tiff
- zarr
- viv
- +1 more
+1 stars
from 372 · score 0.69
70.heise3 / ExtremaRank
Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk
- bioinformatics
- exact-optimization
- metabolomics
- paired-data
- proteomics
- python
- +14 more
+1 stars
from 287 · score 0.69
71.architecture-building-systems / CityEnergyAnalyst
City Energy Analyst (CEA) is an open-source urban building energy modeling (UBEM) platform and computation tool for the design of low-carbon and highly efficient cities.
- python
- urban-design
- urban-analytics
- ubem
- open-source
- decarbonization
- +5 more
+1 stars
from 282 · score 0.69
72.mojaie / MolecularGraph.jl
Graph-based molecule modeling toolkit for cheminformatics
- cheminformatics
- molecular-modeling
- chemistry
- toolkit
- julia
- julia-language
- +3 more
+1 stars
from 230 · score 0.69
73.FNNDSC / med2image
Converts medical images to more displayable formats, e.g. NIfTI to jpg.
+1 stars
from 205 · score 0.69
74.connorcoley / rdchiral
Wrapper for RDKit's RunReactants to improve stereochemistry handling
+1 stars
from 191 · score 0.69
75.peterstace / simplefeatures
Simple Features is a pure Go Implementation of the OpenGIS Simple Feature Access Specification
+1 stars
from 175 · score 0.69
76.vlang / vtl
The V Tensor Library
- v
- hacktoberfest
- autograd
- deep-learning
- linear-algebra
- machine-learning
- +5 more
+1 stars
from 172 · score 0.69
+1 stars
from 151 · score 0.69
78.kreshuklab / panseg
A tool for cell instance aware segmentation in densely packed 3D volumetric images
- segmentation
- deep-learning
- bioinformatics
- neural-network
- bioimage-analysis
- image-segmentation
- +1 more
+1 stars
from 136 · score 0.69
79.jokruger / dec128
Zero-dependency 128-bit fixed-point decimal for Go. Exact SQL NUMERIC / PostgreSQL semantics, no heap allocation, no panics — built for money, ledgers and banking arithmetic.
+1 stars
from 54 · score 0.69
80.d-SEAMS / seams-core
The d-SEAMS C++ core engine
- molecular-dynamics-simulation
- molecular-dynamics
- trajectory-analysis
- lua
- nix
- d-seams
- +8 more
+1 stars
from 42 · score 0.69
81.infomity / jscipy
Java Scientific Computing Library - Signal Processing, FFT, Filters, PSD, DCT, SciPy-like APIs for JVM & Android used in Machine Learning and Data Science.
- android
- java
- python
- scipy
- scipy-signal
- signal-processing
- +13 more
+1 stars
from 25 · score 0.69