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8 repositories by Attention Score · May 9, 2026 – Nov 4, 2026 (UTC)
The repository provides code for running inference and finetuning with the Meta Segment Anything Model 3 (SAM 3), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
CellViT: Vision Transformers for Precise Cell Segmentation and Classification
ilastik-shell, applets, and workflows to string them together.
A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy