+49 stars
from 3,072 · score 3.91
Trending repositories
Ranked by Attention Score: stars gained over the last 30 complete days
17 repositories by Attention Score · Oct 6, 2026 – Nov 4, 2026 (UTC)
2.biopython / biopython
Official git repository for Biopython (originally converted from CVS)
- python
- bioinformatics
- genomics
- biopython
- protein
- protein-structure
- +3 more
+45 stars
from 5,216 · score 3.83
3.Biohub / esm
The repository host gives no description.
+35 stars
from 2,980 · score 3.58
4.ClawBio / ClawBio
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
- ai-agents
- bioinformatics
- equity
- genomics
- local-first
- openclaw
- +2 more
+23 stars
from 1,150 · score 3.18
5.instadeepai / nucleotide-transformer
Foundation Models for Genomics & Transcriptomics
- genomics
- deep-learning
- transformer
- dna
- foundation-models
- transcriptomics
- +1 more
+15 stars
from 922 · score 2.77
6.dcjones / proseg
Probabilistic cell segmentation for in situ spatial transcriptomics
+6 stars
from 192 · score 1.95
7.samtools / htslib
C library for high-throughput sequencing data formats
- htslib
- bioinformatics
- sam
- bam
- cram
- vcf
- +2 more
+3 stars
from 953 · score 1.39
+3 stars
from 558 · score 1.39
9.haddocking / pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.
- python
- protein
- pdb
- bioinformatics
- structural-biology
- structural-bioinformatics
- +2 more
+3 stars
from 458 · score 1.39
10.biolink / biolink-model
Schema and generated objects for biolink data model and upper ontology
- biolink
- monarchinitiative
- gene-ontology
- datamodel
- standard
- specification
- +11 more
+3 stars
from 265 · score 1.39
11.dib-lab / khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
- dna
- k-mer
- python
- bloom-filter
- count-min-sketch
- graph-traversal
- +1 more
+2 stars
from 789 · score 1.10
12.kharchenkolab / numbat
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
- cancer-genomics
- cnv-detection
- single-cell
- phylogeny
- single-cell-analysis
- single-cell-rna-seq
- +4 more
+2 stars
from 231 · score 1.10
13.sanderlab / scPerturb
scPerturb: A resource and a python/R tool for single-cell perturbation data
+2 stars
from 190 · score 1.10
14.JuliaPhylo / PhyloNetworks.jl
PhyloNetworks: a julia package with utilities for phylogenetic networks
+2 stars
from 175 · score 1.10
15.CellProfiler / CellProfiler-Analyst
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
- cellprofiler-analyst
- cellprofiler
- image-analysis
- machine-learning
+1 stars
from 171 · score 0.69
16.FunctionLab / sei-framework
code to run sei and obtain sei and sequence class predictions
+1 stars
from 118 · score 0.69
17.mahmoodlab / MAPS
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
- cell-annotation
- multiplexed-imaging
- mpif
+1 stars
from 66 · score 0.69