Trending repositories

Ranked by Attention Score: stars gained over the last 7 complete days

Period

Sort order

Tags: Bioinformatics

1.biopython / biopython

Official git repository for Biopython (originally converted from CVS)

python
bioinformatics
genomics
biopython
protein
protein-structure
+3 more

Python Other license5.3K total2K forks

+13 stars

from 5,248 · score 2.64

2.RosettaCommons / RFdiffusion

Code for running RFdiffusion

Python Other license3.1K total656 forks

+13 stars

from 3,108 · score 2.64

3.instadeepai / nucleotide-transformer

Foundation Models for Genomics & Transcriptomics

genomics
deep-learning
transformer
dna
foundation-models
transcriptomics
+1 more

Jupyter Notebook Other license937 total103 forks

+9 stars

from 928 · score 2.30

4.Biohub / esm

The repository host gives no description.

Jupyter Notebook Other license3K total404 forks

+8 stars

from 3,007 · score 2.20

5.ClawBio / ClawBio

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.

ai-agents
bioinformatics
equity
genomics
local-first
openclaw
+2 more

Python Other license1.2K total293 forks

+3 stars

from 1,170 · score 1.39

6.prody / ProDy

A Python Package for Protein Dynamics Analysis

python
protein
dynamics

Python Other license561 total185 forks

+1 stars

from 560 · score 0.69

7.biolink / biolink-model

Schema and generated objects for biolink data model and upper ontology

biolink
monarchinitiative
gene-ontology
datamodel
standard
specification
+11 more

Python Other license268 total91 forks

+1 stars

from 267 · score 0.69

8.kharchenkolab / numbat

Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome

cancer-genomics
cnv-detection
single-cell
phylogeny
single-cell-analysis
single-cell-rna-seq
+4 more

R Other license233 total37 forks

+1 stars

from 232 · score 0.69

Order: Attention Score

Most net stars gained in the window first. The score only puts this gain on a log scale, so the order is the order of the gain.

How the ranking works

Ranked by stars gained in the window. The score is the natural log of one plus that gain, so a repository's rank is exactly its star gain's rank.

score = log1p(net stars gained in the trailing T complete UTC days)

A repository is ranked only when its Star History covers every day of the window and its latest Observation is not missing.

The longest window is 180 days. Star History from the Repository Host goes back at most 180 days before the first daily record that AwesomeRepos made for the repository. A longer window needs more of these daily records first. A repository younger than the window does not rank in it.

The filters select from the same eligible repositories. A repository matches the topics when it has any of them. Total stars is the count now. Last push and creation on the Repository Host count back from the start of today (UTC). The counts beside the languages, licenses, and topics include all ranked repositories in the window. A Tag holds the repositories that have it. See Tags.

A new repository enters the index when it gains stars faster than the published admission threshold, whatever its size. A repository stays in the index after it enters. Thus an archived repository can still rank.

Browse the Repository Index