+1,529 stars
from 31,723 · score 7.33
Trending repositories
Ranked by Attention Score: stars gained over the last 180 complete days
90 repositories by Attention Score · May 8, 2026 – Nov 3, 2026 (UTC)
2.NVIDIA / cutlass
CUDA Templates and Python DSLs for High-Performance Linear Algebra
- cuda
- deep-learning
- deep-learning-library
- cpp
- nvidia
- gpu
- +1 more
+1,087 stars
from 9,605 · score 6.99
3.XAMPPRocky / tokei
Count your code, quickly.
+759 stars
from 14,280 · score 6.63
+729 stars
from 12,148 · score 6.59
5.Biohub / esm
The repository host gives no description.
+709 stars
from 2,304 · score 6.57
6.isl-org / Open3D
Open3D: A Modern Library for 3D Data Processing
- mesh-processing
- computer-graphics
- opengl
- cpp
- python
- reconstruction
- +14 more
+673 stars
from 13,499 · score 6.51
7.sympy / sympy
A computer algebra system written in pure Python
- python
- math
- computer-algebra
- science
- hacktoberfest
+538 stars
from 14,530 · score 6.29
+419 stars
from 10,868 · score 6.04
9.ClawBio / ClawBio
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
- ai-agents
- bioinformatics
- equity
- genomics
- local-first
- openclaw
- +2 more
+407 stars
from 765 · score 6.01
10.openrocket / openrocket
Model-rocketry aerodynamics and trajectory simulation software
- aerospace
- flight-simulator
- java
- modeling
- optimization
- rocket
- +3 more
+398 stars
from 2,793 · score 5.99
+278 stars
from 2,841 · score 5.63
12.Slicer / Slicer
Multi-platform, free open source software for visualization and image computing.
- medical-imaging
- vtk
- itk
- python
- qt
- image-processing
- +14 more
+273 stars
from 2,430 · score 5.61
13.biopython / biopython
Official git repository for Biopython (originally converted from CVS)
- python
- bioinformatics
- genomics
- biopython
- protein
- protein-structure
- +3 more
+269 stars
from 4,988 · score 5.60
14.CGAL / cgal
The public CGAL repository, see the README below
- cgal
- c-plus-plus
- geometry
- algorithms
- library
- cpp
- +11 more
+253 stars
from 5,853 · score 5.54
15.shopspring / decimal
Arbitrary-precision fixed-point decimal numbers in Go
- go
- decimals
- precision
- money
- bignumber
- golang
+204 stars
from 7,307 · score 5.32
16.chemprop / chemprop
Message Passing Neural Networks for Molecule Property Prediction
- machine-learning
- chemistry
- neural-networks
- drug-discovery
+176 stars
from 2,341 · score 5.18
17.facebookresearch / pytorch3d
PyTorch3D is FAIR's library of reusable components for deep learning with 3D data
+172 stars
from 9,821 · score 5.15
18.BrunoLevy / geogram
a programming library with geometric algorithms
- graphics-libraries
- graphics-programming
- mesh-generation
- mesh-processing
- geometry-processing
+169 stars
from 2,403 · score 5.14
19.KratosMultiphysics / Kratos
Kratos Multiphysics (A.K.A Kratos) is a framework for building parallel multi-disciplinary simulation software. Modularity, extensibility and HPC are the main objectives. Kratos has BSD license and is written in C++ with extensive Python interface.
- kratos
- fem
- dem
- parallel-computing
- openmp
- numerical-methods
- +7 more
+137 stars
from 1,255 · score 4.93
20.mborgerding / kissfft
a Fast Fourier Transform (FFT) library that tries to Keep it Simple, Stupid
+106 stars
from 1,898 · score 4.67
21.osrf / gazebo_models
Gazebo database of SDF models. This is a predecessor to https://app.gazebosim.org
- gazebo
- simulation
- robot-simulation
- robotics
- gazebosim
- ros
- +4 more
+99 stars
from 1,237 · score 4.61
+98 stars
from 719 · score 4.60
23.SciML / DifferentialEquations.jl
Multi-language suite for high-performance solvers of differential equations and scientific machine learning (SciML) components. Ordinary differential equations (ODEs), stochastic differential equations (SDEs), delay differential equations (DDEs), differential-algebraic equations (DAEs), and more in Julia.
- differential-equations
- differentialequations
- julia
- ode
- sde
- dae
- +14 more
+96 stars
from 3,081 · score 4.57
24.dealii / dealii
The development repository for the deal.II finite element library
- finite-elements
- c-plus-plus
- fem
- hpc
- parallel-computing
- scientific-computing
- +1 more
+96 stars
from 1,658 · score 4.57
25.brian-team / brian2
Brian is a free, open source simulator for spiking neural networks.
- python
- neuroscience
- science
- differential-equations
- spiking-neural-networks
- biological-simulations
- +5 more
+90 stars
from 1,164 · score 4.51
26.R74nCom / sandboxels
In-browser falling-sand simulation game with over 500 elements and thousands of reactions.
- browser-game
- cellular-automata
- cellular-automaton
- chemistry
- chemistry-lab
- falling-sand
- +14 more
+90 stars
from 387 · score 4.51
27.stevengj / nlopt
library for nonlinear optimization, wrapping many algorithms for global and local, constrained or unconstrained, optimization
+87 stars
from 2,201 · score 4.48
+87 stars
from 1,684 · score 4.48
29.mahmoud / boltons
🔩 Like builtins, but boltons. 250+ constructs, recipes, and snippets which extend (and rely on nothing but) the Python standard library. Nothing like Michael Bolton.
- python
- utilities
- cache
- data-structures
- statistics
- data-science
- +5 more
+86 stars
from 6,858 · score 4.47
30.Reference-LAPACK / lapack
LAPACK development repository
- linear-algebra
- lapack
- blas
- lapacke
- linear-equations
- eigenvalues
- +4 more
+80 stars
from 1,838 · score 4.39
31.flame / blis
BLAS-like Library Instantiation Software Framework
- blis
- blas
- blas-libraries
- linear-algebra
- linear-algebra-library
- matrix-multiplication
- +8 more
+79 stars
from 2,619 · score 4.38
32.mahmoodlab / UNI
Pathology Foundation Model - Nature Medicine
- foundation
- foundation-model
- histopathology
- mahmoodlab
- pathology
- uni
- +11 more
+79 stars
from 719 · score 4.38
33.mlmed / torchxrayvision
TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.
- medical-imaging
- medical-ai
- deep-learning
- machine-learning
- transfer-learning
- dataset
- +13 more
+78 stars
from 1,138 · score 4.37
34.instadeepai / nucleotide-transformer
Foundation Models for Genomics & Transcriptomics
- genomics
- deep-learning
- transformer
- dna
- foundation-models
- transcriptomics
- +1 more
+75 stars
from 859 · score 4.33
35.symengine / symengine
SymEngine is a fast symbolic manipulation library, written in C++
- math
- computer-algebra
- c-plus-plus
+72 stars
from 1,354 · score 4.29
36.3dmol / 3Dmol.js
WebGL accelerated JavaScript molecular graphics library
- molecular-graphics
- molecular-modeling
- computational-biology
- computational-chemistry
+72 stars
from 964 · score 4.29
37.hjwdzh / QuadriFlow
QuadriFlow: A Scalable and Robust Method for Quadrangulation
- quadriflow
- quad
- remeshing
- quadrangulation
- geometry
+65 stars
from 817 · score 4.19
38.trilinos / Trilinos
Primary repository for the Trilinos Project
- snl-science-libs
- sandia-national-laboratories
- hpsf
- scientific-computing
- high-performance-computing
- c-plus-plus
- +2 more
+64 stars
from 1,378 · score 4.17
39.NetTopologySuite / NetTopologySuite
A .NET GIS solution that is fast and reliable for the .NET platform.
- topology
- nts
- sfs
- c-sharp
- library
- jts
- +1 more
+55 stars
from 1,673 · score 4.03
+55 stars
from 1,309 · score 4.03
41.PixarAnimationStudios / OpenSubdiv
An Open-Source subdivision surface library.
+52 stars
from 3,037 · score 3.97
42.nasa / trick
Trick Simulation Environment. Trick provides a common set of simulation capabilities and utilities to build simulations automatically.
+47 stars
from 133 · score 3.87
43.hypre-space / hypre
Parallel solvers for sparse linear systems featuring multigrid methods.
- math-physics
- library
- hpc
- radiuss
+46 stars
from 829 · score 3.85
44.samtools / htslib
C library for high-throughput sequencing data formats
- htslib
- bioinformatics
- sam
- bam
- cram
- vcf
- +2 more
+40 stars
from 917 · score 3.71
45.firedrakeproject / firedrake
Firedrake is an automated system for the portable solution of partial differential equations using the finite element method (FEM)
+35 stars
from 646 · score 3.58
46.usnistgov / fipy
FiPy is a Finite Volume PDE solver written in Python
- scientific-computing
- scientific-computing-with-python
- phase-field
- materials-science
- partial-differential-equations
- shared-memory-parallel
- +2 more
+33 stars
from 613 · score 3.53
+32 stars
from 568 · score 3.50
48.MmgTools / mmg
open source software for bidimensional and tridimensional remeshing
- mesh
- mesh-adaptation
- anisotropic-mesh-adaptation
- isotropic-mesh-adaptation
- mesh-quality-improvement
- surface-improvement
- +11 more
+31 stars
from 460 · score 3.47
49.fo-dicom / fo-dicom
Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity
- dicom
- netcore
- medical
- medical-imaging
- dot-net
- c-sharp
- +4 more
+30 stars
from 1,190 · score 3.43
50.libtom / libtommath
LibTomMath is a free open source portable number theoretic multiple-precision integer library written entirely in C.
- mpi
- libtommath
- c
- math
- multi-precision
+30 stars
from 782 · score 3.43
51.immunogenomics / harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
+30 stars
from 644 · score 3.43
52.dylanrees / citizen-science
🔬 A repository of resources related to citizen, community-based and/or non-institutional science
- citizen-science
- science
- lab-equipment
- scientific
- activism
+29 stars
from 304 · score 3.40
53.PetteriAimonen / libfixmath
Cross Platform Fixed Point Maths Library
+28 stars
from 861 · score 3.37
54.UniMath / UniMath
This rocq library aims to formalize a substantial body of mathematics using the univalent point of view.
- coq
- mathematics
- unimath
- coq-library
- foundations
- rocq
- +1 more
+22 stars
from 1,000 · score 3.14
55.alphaville / optimization-engine
Nonconvex embedded optimization: code generation for fast real-time optimization + ROS support
- embedded-optimization
- nonconvex
- model-predictive-control
- rust-library
- rust
- rust-crate
- +14 more
+22 stars
from 629 · score 3.14
56.rbdl / rbdl
RBDL is a C++ library that contains some essential and efficient rigid body dynamics algorithms such as the Articulated Body Algorithm (ABA) for forward dynamics, Recursive Newton-Euler Algorithm (RNEA) for inverse dynamics, the Composite Rigid Body Algorithm (CRBA) for the efficient computation of the joint space inertia matrix and is also able to compute forward dynamics with external contact constraints and collision impulses. Furthermore it has some basic support for forward and inverse kinematics.
- articulated-body-algorithm
- inverse-dynamics
- forward-dynamics
- multi-body-dynamics
- inverse-kinematics
- robotics
+21 stars
from 688 · score 3.09
57.sanderlab / scPerturb
scPerturb: A resource and a python/R tool for single-cell perturbation data
+20 stars
from 172 · score 3.04
58.rsvp / fecon235
Notebooks for financial economics. Keywords: Jupyter notebook pandas Federal Reserve FRED Ferbus GDP CPI PCE inflation unemployment wage income debt Case-Shiller housing asset portfolio equities SPX bonds TIPS rates currency FX euro EUR USD JPY yen XAU gold Brent WTI oil Holt-Winters time-series forecasting statistics econometrics
- jupyter-notebook
- pandas
- federal-reserve
- gdp
- inflation
- housing
- +14 more
+19 stars
from 1,263 · score 3.00
59.qhull / qhull
Qhull development for www.qhull.org -- Qhull 2020.2 (8.1-alpha1) at https://github.com/qhull/qhull/wiki
- qhull
- computational-geometry
- convex-hull
- delaunay-triangulation
- voronoi-diagram
- halfspace-intersection
- +3 more
+18 stars
from 810 · score 2.94
60.brandon-rhodes / pyephem
Scientific-grade astronomy routines for Python
+17 stars
from 883 · score 2.89
61.ebassi / graphene
A thin layer of graphic data types
- graphics-library
- vector
- transformations
- matrix
- 3d-transformations
- c
- +4 more
+17 stars
from 425 · score 2.89
62.chebfun / chebfun
Chebfun: numerical computing with functions.
+16 stars
from 665 · score 2.83
63.inducer / meshpy
2D/3D simplicial mesh generator interface for Python (Triangle, TetGen, gmsh)
- python
- mesh-generation
- scientific-computing
- triangle
- tetgen
- wrapper
- +1 more
+15 stars
from 575 · score 2.77
64.LigandPro / Matcha
Multi-stage Riemannian flow matching for physically valid molecular docking, with GNINA scoring, PoseBusters filtering, CLI inference, and benchmarks.
- alphafold3
- docking
- drug-design
- drug-discovery
- flowmatching
- gnina
- +8 more
+14 stars
from 23 · score 2.71
65.GlPortal / glPortal
:video_game: Open Source teleportation based first person puzzle-platformer
+13 stars
from 376 · score 2.64
66.excessive / cpml
Cirno's Perfect Math Library: Just about everything you need for 2D/3D games. Hopefully.
+13 stars
from 341 · score 2.64
+12 stars
from 14,077 · score 2.56
68.PaddlePaddle / Quantum
The repository host gives no description.
+12 stars
from 639 · score 2.56
69.spamegg1 / Math-for-CS-solutions
Solutions to In-Class questions, Problem Sets and Exams of MIT Mathematics for Computer Science 2015 (same as 2019 Open Learning Library)
- calculus
- counting
- functions
- graph
- graph-theory
- induction
- +11 more
+12 stars
from 187 · score 2.56
70.yt-project / yt
Main yt repository
- data
- visualization
- analysis
- python
- scientific-computing
- scientific-visualization
- +6 more
+11 stars
from 548 · score 2.48
71.haddocking / pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.
- python
- protein
- pdb
- bioinformatics
- structural-biology
- structural-bioinformatics
- +2 more
+10 stars
from 451 · score 2.40
72.blinry / gish
Open Source version of the award-winning physics platformer
+10 stars
from 347 · score 2.40
73.banterle / HDR_Toolbox
HDR Toolbox for processing High Dynamic Range (HDR) images into MATLAB and Octave
- hdr
- tone-mapping
- inverse-tonemapping
- tonemapping
- imaging
- reverse-tone-mapping
- +4 more
+9 stars
from 409 · score 2.30
+8 stars
from 1,566 · score 2.20
75.enlite-ai / maze
Maze Applied Reinforcement Learning Framework
+8 stars
from 287 · score 2.20
76.dib-lab / khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
- dna
- k-mer
- python
- bloom-filter
- count-min-sketch
- graph-traversal
- +1 more
+7 stars
from 784 · score 2.08
77.tencent-ailab / grover
This is a Pytorch implementation of the paper: Self-Supervised Graph Transformer on Large-Scale Molecular Data
+7 stars
from 388 · score 2.08
78.bp-kelley / descriptastorus
Descriptor computation(chemistry) and (optional) storage for machine learning
+6 stars
from 277 · score 1.95
79.JuliaPhylo / PhyloNetworks.jl
PhyloNetworks: a julia package with utilities for phylogenetic networks
+6 stars
from 171 · score 1.95
80.Unidata / netcdf-fortran
Official GitHub repository for netCDF-Fortran libraries, which depend on the netCDF C library. Install the netCDF C library first.
- netcdf-fortran
- unidata
- netcdf-library
- dataset
- hacktoberfest
+5 stars
from 266 · score 1.79
81.mapbox / wagyu
A general library for geometry operations of union, intersections, difference, and xor
- computational-geometry
- union
- intersection
- xor
- geometry
- difference
- +1 more
+5 stars
from 193 · score 1.79
82.aelefebv / nellie
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
- biology
- fluorescence
- image-analysis
- image-processing
- machine-learning
- microscopy
- +3 more
+5 stars
from 93 · score 1.79
+4 stars
from 548 · score 1.61
84.xtreemze / defend
Procedural Cross-Platform 3D Tower Defense WebGame with Physics and AI and Procedural Sound
- babylonjs
- javascript
- typescript
- projectiles
- towers
+3 stars
from 23 · score 1.39
85.rii-mango / Papaya
A pure JavaScript medical research image viewer.
+2 stars
from 580 · score 1.10
86.OpenSimulationInterface / open-simulation-interface
A generic interface for the environmental perception of automated driving functions in virtual scenarios.
- asam
- osi
- open-simulation-interface
- simulation
+2 stars
from 298 · score 1.10
87.ekrich / sblas
Scala Native BLAS (Basic Linear Algebra Subprograms) supporting Linux and macOS
- scala
- scala-native
- math
- linear-algebra
- blas
- linux
- +1 more
+2 stars
from 37 · score 1.10
88.fkromer / awesome-gazeboArchived
Gazebo, the simulation framework for ROS1 and ROS2 is awesome!
+1 stars
from 154 · score 0.69
89.szhorvat / IGraphM
IGraph/M is the igraph interface for Mathematica
- igraph
- mathematica
- mathematics
- network-graph
- graph-theory
- raspberry-pi
- +3 more
+1 stars
from 100 · score 0.69
+1 stars
from 11 · score 0.69