+890 stars
from 32,383 · score 6.79
Trending repositories
Ranked by Attention Score: stars gained over the last 90 complete days
1–100 of 102 by Attention Score · Aug 7, 2026 – Nov 4, 2026 (UTC)
2.NVIDIA / cutlass
CUDA Templates and Python DSLs for High-Performance Linear Algebra
- cuda
- deep-learning
- deep-learning-library
- cpp
- nvidia
- gpu
- +1 more
+527 stars
from 10,167 · score 6.27
+397 stars
from 12,485 · score 5.99
4.isl-org / Open3D
Open3D: A Modern Library for 3D Data Processing
- mesh-processing
- computer-graphics
- opengl
- cpp
- python
- reconstruction
- +14 more
+343 stars
from 13,830 · score 5.84
5.XAMPPRocky / tokei
Count your code, quickly.
+322 stars
from 14,719 · score 5.78
6.sympy / sympy
A computer algebra system written in pure Python
- python
- math
- computer-algebra
- science
- hacktoberfest
+272 stars
from 14,797 · score 5.61
+198 stars
from 11,093 · score 5.29
8.openrocket / openrocket
Model-rocketry aerodynamics and trajectory simulation software
- aerospace
- flight-simulator
- java
- modeling
- optimization
- rocket
- +3 more
+180 stars
from 3,017 · score 5.20
9.Slicer / Slicer
Multi-platform, free open source software for visualization and image computing.
- medical-imaging
- vtk
- itk
- python
- qt
- image-processing
- +14 more
+142 stars
from 2,562 · score 4.96
10.Biohub / esm
The repository host gives no description.
+138 stars
from 2,877 · score 4.93
+125 stars
from 2,996 · score 4.84
12.biopython / biopython
Official git repository for Biopython (originally converted from CVS)
- python
- bioinformatics
- genomics
- biopython
- protein
- protein-structure
- +3 more
+120 stars
from 5,141 · score 4.80
13.CGAL / cgal
The public CGAL repository, see the README below
- cgal
- c-plus-plus
- geometry
- algorithms
- library
- cpp
- +11 more
+118 stars
from 5,989 · score 4.78
14.ClawBio / ClawBio
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
- ai-agents
- bioinformatics
- equity
- genomics
- local-first
- openclaw
- +2 more
+96 stars
from 1,077 · score 4.57
15.BrunoLevy / geogram
a programming library with geometric algorithms
- graphics-libraries
- graphics-programming
- mesh-generation
- mesh-processing
- geometry-processing
+91 stars
from 2,482 · score 4.52
16.chemprop / chemprop
Message Passing Neural Networks for Molecule Property Prediction
- machine-learning
- chemistry
- neural-networks
- drug-discovery
+91 stars
from 2,425 · score 4.52
17.KratosMultiphysics / Kratos
Kratos Multiphysics (A.K.A Kratos) is a framework for building parallel multi-disciplinary simulation software. Modularity, extensibility and HPC are the main objectives. Kratos has BSD license and is written in C++ with extensive Python interface.
- kratos
- fem
- dem
- parallel-computing
- openmp
- numerical-methods
- +7 more
+88 stars
from 1,306 · score 4.49
18.shopspring / decimal
Arbitrary-precision fixed-point decimal numbers in Go
- go
- decimals
- precision
- money
- bignumber
- golang
+72 stars
from 7,440 · score 4.29
19.facebookresearch / pytorch3d
PyTorch3D is FAIR's library of reusable components for deep learning with 3D data
+63 stars
from 9,930 · score 4.16
20.brian-team / brian2
Brian is a free, open source simulator for spiking neural networks.
- python
- neuroscience
- science
- differential-equations
- spiking-neural-networks
- biological-simulations
- +5 more
+55 stars
from 1,202 · score 4.03
+55 stars
from 764 · score 4.03
22.dealii / dealii
The development repository for the deal.II finite element library
- finite-elements
- c-plus-plus
- fem
- hpc
- parallel-computing
- scientific-computing
- +1 more
+52 stars
from 1,703 · score 3.97
23.osrf / gazebo_models
Gazebo database of SDF models. This is a predecessor to https://app.gazebosim.org
- gazebo
- simulation
- robot-simulation
- robotics
- gazebosim
- ros
- +4 more
+51 stars
from 1,285 · score 3.95
24.mahmoud / boltons
🔩 Like builtins, but boltons. 250+ constructs, recipes, and snippets which extend (and rely on nothing but) the Python standard library. Nothing like Michael Bolton.
- python
- utilities
- cache
- data-structures
- statistics
- data-science
- +5 more
+48 stars
from 6,896 · score 3.89
25.SciML / DifferentialEquations.jl
Multi-language suite for high-performance solvers of differential equations and scientific machine learning (SciML) components. Ordinary differential equations (ODEs), stochastic differential equations (SDEs), delay differential equations (DDEs), differential-algebraic equations (DAEs), and more in Julia.
- differential-equations
- differentialequations
- julia
- ode
- sde
- dae
- +14 more
+44 stars
from 3,133 · score 3.81
26.Reference-LAPACK / lapack
LAPACK development repository
- linear-algebra
- lapack
- blas
- lapacke
- linear-equations
- eigenvalues
- +4 more
+43 stars
from 1,875 · score 3.78
27.mborgerding / kissfft
a Fast Fourier Transform (FFT) library that tries to Keep it Simple, Stupid
+40 stars
from 1,966 · score 3.71
28.stevengj / nlopt
library for nonlinear optimization, wrapping many algorithms for global and local, constrained or unconstrained, optimization
+38 stars
from 2,250 · score 3.66
29.3dmol / 3Dmol.js
WebGL accelerated JavaScript molecular graphics library
- molecular-graphics
- molecular-modeling
- computational-biology
- computational-chemistry
+38 stars
from 998 · score 3.66
30.mahmoodlab / UNI
Pathology Foundation Model - Nature Medicine
- foundation
- foundation-model
- histopathology
- mahmoodlab
- pathology
- uni
- +11 more
+38 stars
from 759 · score 3.66
31.mlmed / torchxrayvision
TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.
- medical-imaging
- medical-ai
- deep-learning
- machine-learning
- transfer-learning
- dataset
- +13 more
+36 stars
from 1,179 · score 3.61
32.flame / blis
BLAS-like Library Instantiation Software Framework
- blis
- blas
- blas-libraries
- linear-algebra
- linear-algebra-library
- matrix-multiplication
- +8 more
+34 stars
from 2,664 · score 3.56
33.instadeepai / nucleotide-transformer
Foundation Models for Genomics & Transcriptomics
- genomics
- deep-learning
- transformer
- dna
- foundation-models
- transcriptomics
- +1 more
+34 stars
from 903 · score 3.56
34.hjwdzh / QuadriFlow
QuadriFlow: A Scalable and Robust Method for Quadrangulation
- quadriflow
- quad
- remeshing
- quadrangulation
- geometry
+34 stars
from 848 · score 3.56
+33 stars
from 1,738 · score 3.53
36.trilinos / Trilinos
Primary repository for the Trilinos Project
- snl-science-libs
- sandia-national-laboratories
- hpsf
- scientific-computing
- high-performance-computing
- c-plus-plus
- +2 more
+32 stars
from 1,410 · score 3.50
37.symengine / symengine
SymEngine is a fast symbolic manipulation library, written in C++
- math
- computer-algebra
- c-plus-plus
+31 stars
from 1,395 · score 3.47
38.hypre-space / hypre
Parallel solvers for sparse linear systems featuring multigrid methods.
- math-physics
- library
- hpc
- radiuss
+28 stars
from 847 · score 3.37
39.PixarAnimationStudios / OpenSubdiv
An Open-Source subdivision surface library.
+26 stars
from 3,064 · score 3.30
40.firedrakeproject / firedrake
Firedrake is an automated system for the portable solution of partial differential equations using the finite element method (FEM)
+23 stars
from 658 · score 3.18
41.nasa / trick
Trick Simulation Environment. Trick provides a common set of simulation capabilities and utilities to build simulations automatically.
+23 stars
from 157 · score 3.18
42.NetTopologySuite / NetTopologySuite
A .NET GIS solution that is fast and reliable for the .NET platform.
- topology
- nts
- sfs
- c-sharp
- library
- jts
- +1 more
+22 stars
from 1,706 · score 3.14
+22 stars
from 1,342 · score 3.14
44.mahmoodlab / CONCH
Vision-Language Pathology Foundation Model - Nature Medicine
- bioimage-analysis
- bioimage-informatics
- conch
- foundation-model
- health-informatics
- histopathology
- +9 more
+21 stars
from 519 · score 3.09
+19 stars
from 581 · score 3.00
46.libtom / libtommath
LibTomMath is a free open source portable number theoretic multiple-precision integer library written entirely in C.
- mpi
- libtommath
- c
- math
- multi-precision
+18 stars
from 795 · score 2.94
47.samtools / htslib
C library for high-throughput sequencing data formats
- htslib
- bioinformatics
- sam
- bam
- cram
- vcf
- +2 more
+17 stars
from 939 · score 2.89
48.dcjones / proseg
Probabilistic cell segmentation for in situ spatial transcriptomics
+16 stars
from 182 · score 2.83
49.fo-dicom / fo-dicom
Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity
- dicom
- netcore
- medical
- medical-imaging
- dot-net
- c-sharp
- +4 more
+15 stars
from 1,205 · score 2.77
50.rsvp / fecon235
Notebooks for financial economics. Keywords: Jupyter notebook pandas Federal Reserve FRED Ferbus GDP CPI PCE inflation unemployment wage income debt Case-Shiller housing asset portfolio equities SPX bonds TIPS rates currency FX euro EUR USD JPY yen XAU gold Brent WTI oil Holt-Winters time-series forecasting statistics econometrics
- jupyter-notebook
- pandas
- federal-reserve
- gdp
- inflation
- housing
- +14 more
+13 stars
from 1,269 · score 2.64
51.PetteriAimonen / libfixmath
Cross Platform Fixed Point Maths Library
+12 stars
from 877 · score 2.56
52.immunogenomics / harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
+11 stars
from 663 · score 2.48
53.usnistgov / fipy
FiPy is a Finite Volume PDE solver written in Python
- scientific-computing
- scientific-computing-with-python
- phase-field
- materials-science
- partial-differential-equations
- shared-memory-parallel
- +2 more
+11 stars
from 635 · score 2.48
54.rbdl / rbdl
RBDL is a C++ library that contains some essential and efficient rigid body dynamics algorithms such as the Articulated Body Algorithm (ABA) for forward dynamics, Recursive Newton-Euler Algorithm (RNEA) for inverse dynamics, the Composite Rigid Body Algorithm (CRBA) for the efficient computation of the joint space inertia matrix and is also able to compute forward dynamics with external contact constraints and collision impulses. Furthermore it has some basic support for forward and inverse kinematics.
- articulated-body-algorithm
- inverse-dynamics
- forward-dynamics
- multi-body-dynamics
- inverse-kinematics
- robotics
+10 stars
from 699 · score 2.40
55.MmgTools / mmg
open source software for bidimensional and tridimensional remeshing
- mesh
- mesh-adaptation
- anisotropic-mesh-adaptation
- isotropic-mesh-adaptation
- mesh-quality-improvement
- surface-improvement
- +11 more
+10 stars
from 481 · score 2.40
56.biolink / biolink-model
Schema and generated objects for biolink data model and upper ontology
- biolink
- monarchinitiative
- gene-ontology
- datamodel
- standard
- specification
- +11 more
+10 stars
from 258 · score 2.40
57.sanderlab / scPerturb
scPerturb: A resource and a python/R tool for single-cell perturbation data
+10 stars
from 182 · score 2.40
58.UniMath / UniMath
This rocq library aims to formalize a substantial body of mathematics using the univalent point of view.
- coq
- mathematics
- unimath
- coq-library
- foundations
- rocq
- +1 more
+9 stars
from 1,013 · score 2.30
59.brandon-rhodes / pyephem
Scientific-grade astronomy routines for Python
+9 stars
from 891 · score 2.30
60.alphaville / optimization-engine
Nonconvex embedded optimization: code generation for fast real-time optimization + ROS support
- embedded-optimization
- nonconvex
- model-predictive-control
- rust-library
- rust
- rust-crate
- +14 more
+9 stars
from 642 · score 2.30
61.ebassi / graphene
A thin layer of graphic data types
- graphics-library
- vector
- transformations
- matrix
- 3d-transformations
- c
- +4 more
+9 stars
from 432 · score 2.30
62.anpa1200 / adversarygraph
Self-hosted AI-assisted CTI-to-detection workbench for ATT&CK mapping, IOC/CVE intelligence, Threat Radar, malware triage, Attack Simulation, and SIEM validation.
- cybersecurity
- docker
- fastapi
- llm
- mitre-attack
- react
- +14 more
+9 stars
from 26 · score 2.30
63.inducer / meshpy
2D/3D simplicial mesh generator interface for Python (Triangle, TetGen, gmsh)
- python
- mesh-generation
- scientific-computing
- triangle
- tetgen
- wrapper
- +1 more
+8 stars
from 582 · score 2.20
64.kharchenkolab / numbat
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
- cancer-genomics
- cnv-detection
- single-cell
- phylogeny
- single-cell-analysis
- single-cell-rna-seq
- +4 more
+8 stars
from 225 · score 2.20
+7 stars
from 554 · score 2.08
66.rocq-community / fourcolor
Formal proof of the Four Color Theorem [maintainer=@ybertot]
- coq
- ssreflect
- mathcomp
- four-color-theorem
- coq-ci
+7 stars
from 246 · score 2.08
67.chebfun / chebfun
Chebfun: numerical computing with functions.
+6 stars
from 675 · score 1.95
68.lukaszcz / coqhammer
CoqHammer: An Automated Reasoning Hammer Tool for Rocq - Proof Automation for Dependent Type Theory
- coq
- hammer
- automation
- proof-search
- theorem-prover
- verification
- +3 more
+6 stars
from 243 · score 1.95
69.hpddm / hpddm
A framework for high-performance domain decomposition methods.
- c-plus-plus
- linear-algebra
- python
- fortran
- c
- freefem
- +4 more
+6 stars
from 155 · score 1.95
70.qhull / qhull
Qhull development for www.qhull.org -- Qhull 2020.2 (8.1-alpha1) at https://github.com/qhull/qhull/wiki
- qhull
- computational-geometry
- convex-hull
- delaunay-triangulation
- voronoi-diagram
- halfspace-intersection
- +3 more
+5 stars
from 823 · score 1.79
71.PaddlePaddle / Quantum
The repository host gives no description.
+5 stars
from 646 · score 1.79
72.haddocking / pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.
- python
- protein
- pdb
- bioinformatics
- structural-biology
- structural-bioinformatics
- +2 more
+5 stars
from 456 · score 1.79
73.rafat / wavelib
C Implementation of 1D and 2D Wavelet Transforms (DWT,SWT and MODWT) along with 1D Wavelet packet Transform and 1D Continuous Wavelet Transform.
- wavelets
- dwt
- continuous-wavelet-transform
- wavelet-packet-trees
- c
- cpp
+5 stars
from 444 · score 1.79
74.Tronald / CoordinateSharp
A library designed to ease geographic coordinate format conversions, and determine sun/moon information in C#
- moon
- coordinates
- longitude
- latitude
- mgrs
- utm
- +13 more
+5 stars
from 380 · score 1.79
75.LigandPro / Matcha
Multi-stage Riemannian flow matching for physically valid molecular docking, with GNINA scoring, PoseBusters filtering, CLI inference, and benchmarks.
- alphafold3
- docking
- drug-design
- drug-discovery
- flowmatching
- gnina
- +8 more
+5 stars
from 32 · score 1.79
76.dib-lab / khmer
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
- dna
- k-mer
- python
- bloom-filter
- count-min-sketch
- graph-traversal
- +1 more
+4 stars
from 787 · score 1.61
77.yt-project / yt
Main yt repository
- data
- visualization
- analysis
- python
- scientific-computing
- scientific-visualization
- +6 more
+4 stars
from 555 · score 1.61
78.excessive / cpml
Cirno's Perfect Math Library: Just about everything you need for 2D/3D games. Hopefully.
+4 stars
from 350 · score 1.61
79.xiaoyeli / superlu
Supernodal sparse direct solver. https://portal.nersc.gov/project/sparse/superlu/
+4 stars
from 333 · score 1.61
80.neslib / FastMath
Fast Math Library for Delphi
- delphi-rtl
- delphi-fastmath
- fastmath
- overloaded-operators
- vectors
- matrix
- +2 more
+4 stars
from 190 · score 1.61
81.FunctionLab / sei-framework
code to run sei and obtain sei and sequence class predictions
+4 stars
from 115 · score 1.61
+3 stars
from 1,571 · score 1.39
83.math-comp / analysis
Mathematical Components compliant Analysis Library
- rocq
- analysis
- coq
- mathcomp
- ssreflect
+3 stars
from 244 · score 1.39
84.mapbox / wagyu
A general library for geometry operations of union, intersections, difference, and xor
- computational-geometry
- union
- intersection
- xor
- geometry
- difference
- +1 more
+3 stars
from 195 · score 1.39
85.HALFpipe / HALFpipe
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
- neuroimaging
- reproducibility
- pipeline
- meta-analysis
- bids
- fmri
+3 stars
from 128 · score 1.39
86.pschwllr / MolecularTransformer
The repository host gives no description.
+2 stars
from 427 · score 1.10
87.pymor / pymor
pyMOR - Model Order Reduction with Python
- python
- model-reduction
- model-order-reduction
- control-systems
- state-space
- data-driven
- +8 more
+2 stars
from 345 · score 1.10
88.bp-kelley / descriptastorus
Descriptor computation(chemistry) and (optional) storage for machine learning
+2 stars
from 280 · score 1.10
+2 stars
from 248 · score 1.10
+2 stars
from 219 · score 1.10
91.microsoft / Quantum-NCArchived
Microsoft Quantum Computing Libraries for noncommercial use
- quantum-development-kit
- quantum
- qdk
- quantum-computing
- qsharp
- python
+2 stars
from 209 · score 1.10
92.JuliaPhylo / PhyloNetworks.jl
PhyloNetworks: a julia package with utilities for phylogenetic networks
+2 stars
from 175 · score 1.10
93.CellProfiler / CellProfiler-Analyst
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
- cellprofiler-analyst
- cellprofiler
- image-analysis
- machine-learning
+2 stars
from 170 · score 1.10
94.JuliaGraphs / NetworkLayout.jl
Layout algorithms for graphs and trees in pure Julia.
- graph-visualization
+2 stars
from 107 · score 1.10
95.ekrich / sblas
Scala Native BLAS (Basic Linear Algebra Subprograms) supporting Linux and macOS
- scala
- scala-native
- math
- linear-algebra
- blas
- linux
- +1 more
+2 stars
from 37 · score 1.10
96.xtreemze / defend
Procedural Cross-Platform 3D Tower Defense WebGame with Physics and AI and Procedural Sound
- babylonjs
- javascript
- typescript
- projectiles
- towers
+2 stars
from 24 · score 1.10
97.OpenSimulationInterface / open-simulation-interface
A generic interface for the environmental perception of automated driving functions in virtual scenarios.
- asam
- osi
- open-simulation-interface
- simulation
+1 stars
from 299 · score 0.69
+1 stars
from 234 · score 0.69
99.CBICA / CaPTk
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
- cancer-imaging-research
- radiomics
- radiomics-features
- machine-learning
- cpp
- cpp11
- +14 more
+1 stars
from 197 · score 0.69
100.libmir / mir-algorithm
Dlang Core Library
- ndslice
- iterator
- range
- algorithms
- multidimensionality
- multidimensional-arrays
+1 stars
from 179 · score 0.69