+1 stars
from 672 · score 0.69
Trending repositories
Ranked by Attention Score: stars gained over the last 7 complete days
201–274 of 274 by Attention Score · Oct 29, 2026 – Nov 4, 2026 (UTC)
202.pyamg / pyamg
Algebraic Multigrid Solvers in Python
- amg
- solver
- python
- multigrid
- sparse-matrix
- pyamg
- +2 more
+1 stars
from 661 · score 0.69
203.PaddlePaddle / Quantum
The repository host gives no description.
+1 stars
from 650 · score 0.69
204.usnistgov / fipy
FiPy is a Finite Volume PDE solver written in Python
- scientific-computing
- scientific-computing-with-python
- phase-field
- materials-science
- partial-differential-equations
- shared-memory-parallel
- +2 more
+1 stars
from 645 · score 0.69
205.prov-gigapath / prov-gigapath
Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data
+1 stars
from 644 · score 0.69
206.ginkgo-project / ginkgo
Numerical linear algebra software package
- linear-algebra
- hpc
- gpu-computing
- cuda
- krylov-methods
- preconditioning
- +6 more
+1 stars
from 629 · score 0.69
207.cdk / cdk
The Chemistry Development Kit
- code4lib
- chemistry
- java
- cheminformatics
- bioinformatics
- blueobelisk
+1 stars
from 611 · score 0.69
208.microsoft / QuantumLibrariesArchived
Q# libraries for the Quantum Development Kit
- qsharp
- qdk
- quantum
- quantum-development-kit
- quantum-computing
- hacktoberfest
+1 stars
from 573 · score 0.69
+1 stars
from 560 · score 0.69
210.esa / pygmo2
A Python platform to perform parallel computations of optimisation tasks (global and local) via the asynchronous generalized island model.
- optimization
- optimization-algorithms
- optimization-methods
- optimization-problem
- evolutionary-algorithms
- multiobjective-optimization
- +9 more
+1 stars
from 543 · score 0.69
211.mahmoodlab / CONCH
Vision-Language Pathology Foundation Model - Nature Medicine
- bioimage-analysis
- bioimage-informatics
- conch
- foundation-model
- health-informatics
- histopathology
- +9 more
+1 stars
from 539 · score 0.69
212.MAGICS-LAB / DNABERT_2
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
- dataset
- dna
- dna-processing
- dna-training
- genome
- genome-analysis
- +10 more
+1 stars
from 518 · score 0.69
213.Teichlab / celltypist
A tool for semi-automatic cell type classification
- python
- single-cell
- machine-learning
- scrna-seq
- cell-type-classification
- label-transfer
+1 stars
from 516 · score 0.69
214.pathsim / pathsim
A Python native dynamical system simulation framework in the block diagram paradigm.
- blockdiagram
- control-systems
- hierarchical-modeling
- nonlinear-dynamics
- simulation
- system-simulation
- +14 more
+1 stars
from 511 · score 0.69
215.v923z / micropython-ulab
a numpy-like fast vector module for micropython, circuitpython, and their derivatives
- micropython-ulab
- numpy
- micropython
- module
- circuitpython
- openmv
- +5 more
+1 stars
from 502 · score 0.69
216.shenwei356 / taxonkit
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
- bioinformatics
- taxonomy
- cross-platform
- lineage
- lca
- taxid
- +2 more
+1 stars
from 483 · score 0.69
217.brandon-rhodes / python-sgp4
Python version of the SGP4 satellite position library
+1 stars
from 480 · score 0.69
218.calico / basenji
Sequential regulatory activity predictions with deep convolutional neural networks.
+1 stars
from 477 · score 0.69
219.Dana-Farber-AIOS / pathml
Tools for computational pathology
- machine-learning
- digital-pathology
- computational-pathology
- biomedical-image-processing
- pathology
- histopathology
- +9 more
+1 stars
from 467 · score 0.69
220.MolSSI / cookiecutter-cms
Python-centric Cookiecutter for Molecular Computational Chemistry Packages
- cookiecutter
- python-packages
- molecular-sciences
- conda-environment
- pytest
- conda-forge
- +2 more
+1 stars
from 465 · score 0.69
221.aurora-opensource / au
A C++14-compatible physical units library with no dependencies and a single-file delivery option. Emphasis on safety, accessibility, performance, and developer experience.
- cpp
- cpp14
- cpp14-library
- dimensional-analysis
- physical-quantities
- quantity
- +11 more
+1 stars
from 448 · score 0.69
222.rafat / wavelib
C Implementation of 1D and 2D Wavelet Transforms (DWT,SWT and MODWT) along with 1D Wavelet packet Transform and 1D Continuous Wavelet Transform.
- wavelets
- dwt
- continuous-wavelet-transform
- wavelet-packet-trees
- c
- cpp
+1 stars
from 448 · score 0.69
+1 stars
from 430 · score 0.69
224.esa / pykep
PyKEP is a scientific library providing basic tools for research in interplanetary trajectory design.
- interplanetary
- mission-analysis
- astrodynamics
- aerospace
+1 stars
from 429 · score 0.69
225.vlang / vsl
V library to develop Artificial Intelligence and High-Performance Scientific Computations
- v
- hacktoberfest
- linear-algebra
- optimization
- sparse-systems
- computational-geometry
- +7 more
+1 stars
from 405 · score 0.69
226.fastlib / fCWT
The fast Continuous Wavelet Transform (fCWT) is a library for fast calculation of CWT.
- cwt
- matlab
- cpp
- optimization
- c
- fast
- +3 more
+1 stars
from 403 · score 0.69
227.blueqat / blueqatSDK
Quantum Computer Library for Everyone
- quantum
- python
- quantum-computing
- quantum-algorithms
- quantum-programming-language
- quantum-computer-simulator
- +1 more
+1 stars
from 389 · score 0.69
228.PathologyFoundation / plip
Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PLIP is a large-scale pre-trained model that can be used to extract visual and language features from pathology images and text description. The model is a fine-tuned version of the original CLIP model.
- artificial-intelligence
- clip
- pathology
- vision-and-language
+1 stars
from 382 · score 0.69
229.adalca / neurite
Neural networks toolbox focused on medical image analysis
- python
- keras
- convolutional-neural-networks
- brain
- medical-imaging
- medical-image-computing
- +1 more
+1 stars
from 376 · score 0.69
230.isayev / ReLeaSE
Deep Reinforcement Learning for de-novo Drug Design
- deeplearning
- reinforcement-learning
- cheminformatics
- molecular-modeling
- drug-discovery
- qsar
+1 stars
from 374 · score 0.69
231.hms-dbmi / viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
- hubmap
- imaging
- openmicroscopy
- ome-tiff
- zarr
- viv
- +1 more
+1 stars
from 372 · score 0.69
232.excessive / cpml
Cirno's Perfect Math Library: Just about everything you need for 2D/3D games. Hopefully.
+1 stars
from 353 · score 0.69
233.guanjq / targetdiff
The official implementation of 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction (ICLR 2023)
- ai-for-science
- diffusion-models
- drug-design
- equivariant-networks
- iclr2023
+1 stars
from 350 · score 0.69
234.DLR-SC / tigl
The TiGL Geometry Library to process aircraft geometries in pre-design.
- opencascade
- aircraft
- c-plus-plus
- geometry
- b-spline
- cpacs
- +1 more
+1 stars
from 309 · score 0.69
235.CEED / libCEED
CEED Library: Code for Efficient Extensible Discretizations
- ceed
- high-order
- exascale-computing
- api
- ecp
- high-performance-computing
- +5 more
+1 stars
from 272 · score 0.69
236.statebox / idris-ct
formally verified category theory library
- category-theory
- formal-verification
- formal-proofs
+1 stars
from 272 · score 0.69
237.runmat-org / runmat
Open source math and physics engine that executes MATLAB-syntax code. Features a modern compiler, automatic GPU acceleration for large calculations, and support for math on geometry / FEA calculations.
- matlab
- rust
- jit-compiler
- linear-algebra
- mathematics
- numerical-analysis
- +6 more
+1 stars
from 270 · score 0.69
238.calico / borzoi
RNA-seq prediction with deep convolutional neural networks.
+1 stars
from 268 · score 0.69
239.biolink / biolink-model
Schema and generated objects for biolink data model and upper ontology
- biolink
- monarchinitiative
- gene-ontology
- datamodel
- standard
- specification
- +11 more
+1 stars
from 267 · score 0.69
240.wildmeshing / TriWild
TriWild: Robust Triangulation with Curve Constraints
- traingulation
- meshing
- geometry-processing
+1 stars
from 264 · score 0.69
241.rocq-community / fourcolor
Formal proof of the Four Color Theorem [maintainer=@ybertot]
- coq
- ssreflect
- mathcomp
- four-color-theorem
- coq-ci
+1 stars
from 252 · score 0.69
242.kexinhuang12345 / MolTrans
MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
+1 stars
from 250 · score 0.69
243.math-comp / analysis
Mathematical Components compliant Analysis Library
- rocq
- analysis
- coq
- mathcomp
- ssreflect
+1 stars
from 246 · score 0.69
244.dan2097 / opsin
Open Parser for Systematic IUPAC Nomenclature. Chemical name to structure conversion
+1 stars
from 244 · score 0.69
245.brainglobe / cellfinder
Automated 3D cell detection in very large images
- microscopy
- cell-detection
- deep-learning
- image-analysis
- neuroscience
- python
- +2 more
+1 stars
from 232 · score 0.69
246.kharchenkolab / numbat
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
- cancer-genomics
- cnv-detection
- single-cell
- phylogeny
- single-cell-analysis
- single-cell-rna-seq
- +4 more
+1 stars
from 232 · score 0.69
247.microsoft / Quantum-NCArchived
Microsoft Quantum Computing Libraries for noncommercial use
- quantum-development-kit
- quantum
- qdk
- quantum-computing
- qsharp
- python
+1 stars
from 210 · score 0.69
248.FNNDSC / med2image
Converts medical images to more displayable formats, e.g. NIfTI to jpg.
+1 stars
from 205 · score 0.69
249.CSOgroup / cellcharter
A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
+1 stars
from 203 · score 0.69
250.theislab / nicheformer
Repository for Nicheformer: a foundation model for single-cell and spatial omics
+1 stars
from 178 · score 0.69
251.vlang / vtl
The V Tensor Library
- v
- hacktoberfest
- autograd
- deep-learning
- linear-algebra
- machine-learning
- +5 more
+1 stars
from 172 · score 0.69
252.sustainable-processes / summit
Optimising chemical reactions using machine learning
- chemistry
- machine-learning
- optimization
- bayesian-optimization
- neural-networks
- drug-discovery
- +4 more
+1 stars
from 154 · score 0.69
253.brainglobe / brainreg
Automated 3D brain registration with support for multiple species and atlases.
- registration
- atlases
- brain
- neuroscience
- microscopy
- neuroanatomy
+1 stars
from 151 · score 0.69
+1 stars
from 151 · score 0.69
255.weigertlab / spotiflow
Accurate and efficient spot detection for microscopy data
+1 stars
from 147 · score 0.69
256.uds-psl / coq-library-undecidability
A library of mechanised undecidability proofs in the Coq proof assistant.
+1 stars
from 144 · score 0.69
257.J-SNACKKB / FLIP
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
- protein
- protein-sequences
- protein-design
- representation-learning
- protein-fitness-prediction
- protein-function-prediction
+1 stars
from 143 · score 0.69
258.nilseuropa / gazebo_ros_motors
Motor simulation plugins for Gazebo - ROS
+1 stars
from 138 · score 0.69
259.kreshuklab / panseg
A tool for cell instance aware segmentation in densely packed 3D volumetric images
- segmentation
- deep-learning
- bioinformatics
- neural-network
- bioimage-analysis
- image-segmentation
- +1 more
+1 stars
from 136 · score 0.69
260.mrkrd / cochlea
Inner ear models for Python
- python
- cochlea
- inner-ear
- model
- auditory
- computational-neuroscience
- +4 more
+1 stars
from 130 · score 0.69
261.rocq-community / corn
Coq Repository at Nijmegen [maintainers=@spitters,@VincentSe,@Lysxia]
- coq-library
- real-number
- coq
- coq-ci
- coq-platform
+1 stars
from 116 · score 0.69
+1 stars
from 110 · score 0.69
263.OmicsML / CellPLM
Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
+1 stars
from 108 · score 0.69
264.morphonets / SNT
The framework for quantification of neuronal anatomy
- neuroscience
- neuroanatomy-toolbox
- imagej
- imagej2
- scijava
- neurons
- +3 more
+1 stars
from 63 · score 0.69
265.jokruger / dec128
Zero-dependency 128-bit fixed-point decimal for Go. Exact SQL NUMERIC / PostgreSQL semantics, no heap allocation, no panics — built for money, ledgers and banking arithmetic.
+1 stars
from 54 · score 0.69
266.rocq-community / graph-theory
Graph Theory [maintainers=@chdoc,@damien-pous]
- coq
- graph-theory
- mathcomp
- docker-coq-action
- mathcomp-ci
+1 stars
from 45 · score 0.69
267.d-SEAMS / seams-core
The d-SEAMS C++ core engine
- molecular-dynamics-simulation
- molecular-dynamics
- trajectory-analysis
- lua
- nix
- d-seams
- +8 more
+1 stars
from 42 · score 0.69
268.KL-Psychological-Methodology / ESMira
ESMira is a tool for running longitudinal studies (ESM, AA, EMA, ...) with data collection and communication with participants being completely anonymous.
+1 stars
from 29 · score 0.69
269.hissain / jscipy
Java Scientific Computing Library - Signal Processing, FFT, Filters, PSD, DCT, SciPy-like APIs for JVM & Android used in Machine Learning and Data Science.
- android
- java
- python
- scipy
- scipy-signal
- signal-processing
- +13 more
+1 stars
from 25 · score 0.69
270.microsoft / MLADS2020-QuantumClassificationArchived
Quantum Classification tutorial using Microsoft Quantum Development Kit
+1 stars
from 23 · score 0.69
+1 stars
from 11 · score 0.69
272.ppissias / SpacePixels
Astronomical FITS image analysis tool for detecting asteroids, comets, satellites, moving objects, and transients in astrophotography data.
- astronomy
- astronomy-software
- astrophotography
- moving-object-detection
- photometry
- variable-stars
- +6 more
+1 stars
from 7 · score 0.69
+1 stars
from 5 · score 0.69
274.kVeyra / sklearn-java
Java reimplementation of Python's scikit-learn with behavioral compatibility, numerical accuracy, and idiomatic Java design
+1 stars
from 4 · score 0.69