Trending repositories

1.Project-MONAI / MONAI

AI Toolkit for Healthcare Imaging

• healthcare-imaging
• deep-learning
• medical-image-computing
• medical-image-processing
• pytorch
• python3
• +1 more

2.Slicer / Slicer

Multi-platform, free open source software for visualization and image computing.

• medical-imaging
• vtk
• itk
• python
• qt
• image-processing
• +14 more

3.OHIF / Viewers

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

• nci-itcr
• nci-qin
• quantitative-imaging
• imaging-informatics
• cancer-imaging-research
• dicom
• +10 more

4.mlmed / torchxrayvision

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

• medical-imaging
• medical-ai
• deep-learning
• machine-learning
• transfer-learning
• dataset
• +13 more

5.mahmoodlab / UNI

Pathology Foundation Model - Nature Medicine

• foundation
• foundation-model
• histopathology
• mahmoodlab
• pathology
• uni
• +11 more

6.invesalius / invesalius3

3D medical imaging reconstruction software

• dicom
• dicom-viewer
• magnetic-resonance-imaging
• medical-image-processing
• medical-imaging
• segmentation
• +2 more

7.suyashkumar / dicom

⚡High Performance DICOM Medical Image Parser in Go.

• dicom
• dicom-images
• golang
• golang-library
• golang-package
• parser
• +10 more

8.fo-dicom / fo-dicom

Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity

• dicom
• netcore
• medical
• medical-imaging
• dot-net
• c-sharp
• +4 more

9.prov-gigapath / prov-gigapath

Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data

10.hms-dbmi / viv

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

• hubmap
• imaging
• openmicroscopy
• ome-tiff
• zarr
• viv
• +1 more

11.vqdang / hover_net

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

12.mahmoodlab / CONCH

Vision-Language Pathology Foundation Model - Nature Medicine

• bioimage-analysis
• bioimage-informatics
• conch
• foundation-model
• health-informatics
• histopathology
• +9 more

13.ImagingDataCommons / slim

Interoperable web-based DICOM slide microscopy viewer and annotation tool

• dicomweb
• oidc
• react
• digital-pathology
• idc-viewers

14.Dana-Farber-AIOS / pathml

Tools for computational pathology

• machine-learning
• digital-pathology
• computational-pathology
• biomedical-image-processing
• pathology
• histopathology
• +9 more

15.PathologyFoundation / plip

Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PLIP is a large-scale pre-trained model that can be used to extract visual and language features from pathology images and text description. The model is a fine-tuned version of the original CLIP model.

• artificial-intelligence
• clip
• pathology
• vision-and-language

16.lilab-stanford / MUSK

The repository host gives no description.

17.brainglobe / brainglobe-atlasapi

A Python interface to access neuroanatomical atlases

• neuroscience
• python
• microscopy
• registration
• visualisation
• brain
• +1 more

18.hms-dbmi / CHIEF

Clinical Histopathology Imaging Evaluation Foundation Model

19.dicoogle / dicoogle

Dicoogle - Open Source PACS

• dicoogle
• dicom
• pacs
• medical-imaging
• medical-image-computing
• medical-informatics
• +7 more

20.BMIRDS / deepslide

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

• histopathology-images
• microscopy
• sliding-windows
• medical-image-analysis
• resnet
• wsi
• +3 more

21.adalca / neurite

Neural networks toolbox focused on medical image analysis

• python
• keras
• convolutional-neural-networks
• brain
• medical-imaging
• medical-image-computing
• +1 more

22.brainglobe / cellfinder

Automated 3D cell detection in very large images

• microscopy
• cell-detection
• deep-learning
• image-analysis
• neuroscience
• python
• +2 more

23.brainglobe / brainreg

Automated 3D brain registration with support for multiple species and atlases.

• registration
• atlases
• brain
• neuroscience
• microscopy
• neuroanatomy

24.zsdonghao / u-net-brain-tumor

U-Net Brain Tumor Segmentation

• tensorflow
• tensorlayer
• unet
• medical-imaging

25.openslide / openslide

C library for reading virtual slide images

• pathology
• whole-slide-imaging
• c

26.FNNDSC / med2image

Converts medical images to more displayable formats, e.g. NIfTI to jpg.

27.CBICA / CaPTk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk

• cancer-imaging-research
• radiomics
• radiomics-features
• machine-learning
• cpp
• cpp11
• +14 more

28.rexcardan / Evil-DICOM

A C# DICOM Library

• dicom
• medical-physics
• radiology
• radiation-oncology

29.tensorlayer / DAGAN

The implementation code for "DAGAN: Deep De-Aliasing Generative Adversarial Networks for Fast Compressed Sensing MRI Reconstruction"

• generative-adversarial-network
• mri-reconstruction
• computer-vision
• deep-learning

30.priyavrat-misra / xrays-and-gradcam

Classification and Gradient-based Localization of Chest Radiographs using PyTorch.

• fine-tuning
• vgg16
• resnet18
• densenet121
• gradcam
• pytorch-implementation
• +11 more