1.Project-MONAI / MONAI
AI Toolkit for Healthcare Imaging
- healthcare-imaging
- deep-learning
- medical-image-computing
- medical-image-processing
- pytorch
- python3
- +1 more
+288 stars
from 8,539 · score 5.67
Trending repositories
Ranked by Attention Score: stars gained over the last 90 complete days
39 repositories by Attention Score · Aug 7, 2026 – Nov 4, 2026 (UTC)
2.Slicer / Slicer
Multi-platform, free open source software for visualization and image computing.
- medical-imaging
- vtk
- itk
- python
- qt
- image-processing
- +14 more
+142 stars
from 2,562 · score 4.96
3.OHIF / Viewers
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
- nci-itcr
- nci-qin
- quantitative-imaging
- imaging-informatics
- cancer-imaging-research
- dicom
- +10 more
+130 stars
from 4,270 · score 4.88
4.mahmoodlab / UNI
Pathology Foundation Model - Nature Medicine
- foundation
- foundation-model
- histopathology
- mahmoodlab
- pathology
- uni
- +11 more
+38 stars
from 759 · score 3.66
5.mlmed / torchxrayvision
TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.
- medical-imaging
- medical-ai
- deep-learning
- machine-learning
- transfer-learning
- dataset
- +13 more
+36 stars
from 1,179 · score 3.61
6.suyashkumar / dicom
⚡High Performance DICOM Medical Image Parser in Go.
- dicom
- dicom-images
- golang
- golang-library
- golang-package
- parser
- +10 more
+24 stars
from 1,072 · score 3.22
7.vqdang / hover_net
Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.
+23 stars
from 733 · score 3.18
8.mahmoodlab / CONCH
Vision-Language Pathology Foundation Model - Nature Medicine
- bioimage-analysis
- bioimage-informatics
- conch
- foundation-model
- health-informatics
- histopathology
- +9 more
+21 stars
from 519 · score 3.09
9.prov-gigapath / prov-gigapath
Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data
+19 stars
from 626 · score 3.00
10.hms-dbmi / viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
- hubmap
- imaging
- openmicroscopy
- ome-tiff
- zarr
- viv
- +1 more
+19 stars
from 354 · score 3.00
11.invesalius / invesalius3
3D medical imaging reconstruction software
- dicom
- dicom-viewer
- magnetic-resonance-imaging
- medical-image-processing
- medical-imaging
- segmentation
- +2 more
+16 stars
from 799 · score 2.83
12.fo-dicom / fo-dicom
Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity
- dicom
- netcore
- medical
- medical-imaging
- dot-net
- c-sharp
- +4 more
+15 stars
from 1,205 · score 2.77
13.dicoogle / dicoogle
Dicoogle - Open Source PACS
- dicoogle
- dicom
- pacs
- medical-imaging
- medical-image-computing
- medical-informatics
- +7 more
+10 stars
from 525 · score 2.40
+9 stars
from 509 · score 2.30
+9 stars
from 241 · score 2.30
16.Dana-Farber-AIOS / pathml
Tools for computational pathology
- machine-learning
- digital-pathology
- computational-pathology
- biomedical-image-processing
- pathology
- histopathology
- +9 more
+8 stars
from 460 · score 2.20
17.ImagingDataCommons / slim
Interoperable web-based DICOM slide microscopy viewer and annotation tool
+8 stars
from 165 · score 2.20
18.BMIRDS / deepslide
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
- histopathology-images
- microscopy
- sliding-windows
- medical-image-analysis
- resnet
- wsi
- +3 more
+7 stars
from 514 · score 2.08
19.brainglobe / brainglobe-atlasapi
A Python interface to access neuroanatomical atlases
- neuroscience
- python
- microscopy
- registration
- visualisation
- brain
- +1 more
+7 stars
from 183 · score 2.08
20.hms-dbmi / CHIEF
Clinical Histopathology Imaging Evaluation Foundation Model
+6 stars
from 715 · score 1.95
21.sohmandal / classpose
A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources
- bioimage-analysis
- cell-classification
- computer-vision
- digital-pathology
- foundation-models
- microscopy
+6 stars
from 33 · score 1.95
22.PathologyFoundation / plip
Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PLIP is a large-scale pre-trained model that can be used to extract visual and language features from pathology images and text description. The model is a fine-tuned version of the original CLIP model.
- artificial-intelligence
- clip
- pathology
- vision-and-language
+4 stars
from 379 · score 1.61
23.PytorchConnectomics / pytorch_connectomics
PyTorch Connectomics: segmentation toolbox for EM connectomics
- computer-vision
- neuroscience
- connectomics
- pytorch
- segmentation
- biomedical-image-processing
- +2 more
+4 stars
from 198 · score 1.61
24.zsdonghao / u-net-brain-tumor
U-Net Brain Tumor Segmentation
- tensorflow
- tensorlayer
- unet
- medical-imaging
+3 stars
from 534 · score 1.39
25.adalca / neurite
Neural networks toolbox focused on medical image analysis
- python
- keras
- convolutional-neural-networks
- brain
- medical-imaging
- medical-image-computing
- +1 more
+3 stars
from 374 · score 1.39
26.mahmoodlab / PORPOISE
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
- histology
- wsi-images
- pan-cancer-analysis
- genomics
- mahmoodlab
+3 stars
from 249 · score 1.39
27.brainglobe / cellfinder
Automated 3D cell detection in very large images
- microscopy
- cell-detection
- deep-learning
- image-analysis
- neuroscience
- python
- +2 more
+3 stars
from 230 · score 1.39
+3 stars
from 190 · score 1.39
29.brainglobe / brainreg
Automated 3D brain registration with support for multiple species and atlases.
- registration
- atlases
- brain
- neuroscience
- microscopy
- neuroanatomy
+3 stars
from 149 · score 1.39
30.HALFpipe / HALFpipe
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
- neuroimaging
- reproducibility
- pipeline
- meta-analysis
- bids
- fmri
+3 stars
from 128 · score 1.39
31.axondeepseg / axondeepseg
Axon/Myelin segmentation using Deep Learning
- deep-learning
- machine-learning
- myelin
- axon
- neuropoly
- spinalcord
- +5 more
+3 stars
from 126 · score 1.39
32.kaapana / kaapana
Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging. The name Kaapana comes from the Hawaiian word kaʻāpana, meaning "distributor" or "part".
- imaging
- ai
- cloud-computing
- medical-imaging
- medical-image-processing
- platform
- +1 more
+2 stars
from 274 · score 1.10
33.mahmoodlab / TOAD
AI-based pathology predicts origins for cancers of unknown primary - Nature
- histology
- pathology
- wsi-images
- histopathology
- cancer-imaging-research
- cancer-research
- +9 more
+2 stars
from 184 · score 1.10
34.cornerstonejs / cornerstone
[Deprecated] Use Cornerstone3D Instead https://cornerstonejs.org/
- javascript
- cornerstone
- dicom
- medical-imaging
- nci-itcr
+1 stars
from 2,105 · score 0.69
35.DICOMcloud / DICOMcloud
Azure friendly DICOMweb part 18 .NET server with qido-rs, wado-rs, stow-rs, wado-uri RESTful implementation
- dicom
- dicomweb
- dicomcloud
- wado
- wado-uri
- wado-rs
- +5 more
+1 stars
from 234 · score 0.69
36.CBICA / CaPTk
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
- cancer-imaging-research
- radiomics
- radiomics-features
- machine-learning
- cpp
- cpp11
- +14 more
+1 stars
from 197 · score 0.69
37.tensorlayer / DAGAN
The implementation code for "DAGAN: Deep De-Aliasing Generative Adversarial Networks for Fast Compressed Sensing MRI Reconstruction"
- generative-adversarial-network
- mri-reconstruction
- computer-vision
- deep-learning
+1 stars
from 180 · score 0.69
38.AICAN-Research / FAST-Pathology
⚡ Open-source software for deep learning-based digital pathology
- deep-learning
- machine-learning
- digital-pathology
- computational-pathology
- software
- free-to-use
- +11 more
+1 stars
from 145 · score 0.69
39.priyavrat-misra / xrays-and-gradcam
Classification and Gradient-based Localization of Chest Radiographs using PyTorch.
- fine-tuning
- vgg16
- resnet18
- densenet121
- gradcam
- pytorch-implementation
- +11 more
+1 stars
from 59 · score 0.69