1.Project-MONAI / MONAI
AI Toolkit for Healthcare Imaging
- healthcare-imaging
- deep-learning
- medical-image-computing
- medical-image-processing
- pytorch
- python3
- +1 more
+746 stars
from 8,081 · score 6.62
Trending repositories
Ranked by Attention Score: stars gained over the last 180 complete days
33 repositories by Attention Score · May 9, 2026 – Nov 4, 2026 (UTC)
2.Slicer / Slicer
Multi-platform, free open source software for visualization and image computing.
- medical-imaging
- vtk
- itk
- python
- qt
- image-processing
- +14 more
+269 stars
from 2,435 · score 5.60
3.OHIF / Viewers
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
- nci-itcr
- nci-qin
- quantitative-imaging
- imaging-informatics
- cancer-imaging-research
- dicom
- +10 more
+264 stars
from 4,136 · score 5.58
4.mahmoodlab / UNI
Pathology Foundation Model - Nature Medicine
- foundation
- foundation-model
- histopathology
- mahmoodlab
- pathology
- uni
- +11 more
+78 stars
from 719 · score 4.37
5.mlmed / torchxrayvision
TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.
- medical-imaging
- medical-ai
- deep-learning
- machine-learning
- transfer-learning
- dataset
- +13 more
+77 stars
from 1,138 · score 4.36
6.vqdang / hover_net
Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.
+48 stars
from 708 · score 3.89
7.prov-gigapath / prov-gigapath
Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data
+48 stars
from 597 · score 3.89
8.mahmoodlab / CONCH
Vision-Language Pathology Foundation Model - Nature Medicine
- bioimage-analysis
- bioimage-informatics
- conch
- foundation-model
- health-informatics
- histopathology
- +9 more
+46 stars
from 494 · score 3.85
9.suyashkumar / dicom
⚡High Performance DICOM Medical Image Parser in Go.
- dicom
- dicom-images
- golang
- golang-library
- golang-package
- parser
- +10 more
+40 stars
from 1,056 · score 3.71
10.invesalius / invesalius3
3D medical imaging reconstruction software
- dicom
- dicom-viewer
- magnetic-resonance-imaging
- medical-image-processing
- medical-imaging
- segmentation
- +2 more
+34 stars
from 781 · score 3.56
11.fo-dicom / fo-dicom
Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity
- dicom
- netcore
- medical
- medical-imaging
- dot-net
- c-sharp
- +4 more
+30 stars
from 1,190 · score 3.43
12.hms-dbmi / viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
- hubmap
- imaging
- openmicroscopy
- ome-tiff
- zarr
- viv
- +1 more
+30 stars
from 343 · score 3.43
+24 stars
from 494 · score 3.22
+22 stars
from 228 · score 3.14
15.hms-dbmi / CHIEF
Clinical Histopathology Imaging Evaluation Foundation Model
+20 stars
from 701 · score 3.04
16.dicoogle / dicoogle
Dicoogle - Open Source PACS
- dicoogle
- dicom
- pacs
- medical-imaging
- medical-image-computing
- medical-informatics
- +7 more
+16 stars
from 519 · score 2.83
17.Dana-Farber-AIOS / pathml
Tools for computational pathology
- machine-learning
- digital-pathology
- computational-pathology
- biomedical-image-processing
- pathology
- histopathology
- +9 more
+16 stars
from 452 · score 2.83
18.kaapana / kaapana
Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging. The name Kaapana comes from the Hawaiian word kaʻāpana, meaning "distributor" or "part".
- imaging
- ai
- cloud-computing
- medical-imaging
- medical-image-processing
- platform
- +1 more
+15 stars
from 261 · score 2.77
19.brainglobe / brainglobe-atlasapi
A Python interface to access neuroanatomical atlases
- neuroscience
- python
- microscopy
- registration
- visualisation
- brain
- +1 more
+12 stars
from 178 · score 2.56
20.ImagingDataCommons / slim
Interoperable web-based DICOM slide microscopy viewer and annotation tool
+12 stars
from 161 · score 2.56
21.PytorchConnectomics / pytorch_connectomics
PyTorch Connectomics: segmentation toolbox for EM connectomics
- computer-vision
- neuroscience
- connectomics
- pytorch
- segmentation
- biomedical-image-processing
- +2 more
+11 stars
from 191 · score 2.48
22.PathologyFoundation / plip
Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PLIP is a large-scale pre-trained model that can be used to extract visual and language features from pathology images and text description. The model is a fine-tuned version of the original CLIP model.
- artificial-intelligence
- clip
- pathology
- vision-and-language
+10 stars
from 373 · score 2.40
23.BMIRDS / deepslide
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
- histopathology-images
- microscopy
- sliding-windows
- medical-image-analysis
- resnet
- wsi
- +3 more
+9 stars
from 512 · score 2.30
24.mahmoodlab / PORPOISE
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
- histology
- wsi-images
- pan-cancer-analysis
- genomics
- mahmoodlab
+9 stars
from 243 · score 2.30
25.brainglobe / cellfinder
Automated 3D cell detection in very large images
- microscopy
- cell-detection
- deep-learning
- image-analysis
- neuroscience
- python
- +2 more
+7 stars
from 226 · score 2.08
26.cornerstonejs / cornerstone
[Deprecated] Use Cornerstone3D Instead https://cornerstonejs.org/
- javascript
- cornerstone
- dicom
- medical-imaging
- nci-itcr
+6 stars
from 2,100 · score 1.95
27.zsdonghao / u-net-brain-tumor
U-Net Brain Tumor Segmentation
- tensorflow
- tensorlayer
- unet
- medical-imaging
+6 stars
from 531 · score 1.95
28.adalca / neurite
Neural networks toolbox focused on medical image analysis
- python
- keras
- convolutional-neural-networks
- brain
- medical-imaging
- medical-image-computing
- +1 more
+4 stars
from 373 · score 1.61
29.CSBDeep / CSBDeep
Image restoration for fluorescence microscopy
+4 stars
from 332 · score 1.61
+4 stars
from 189 · score 1.61
31.DICOMcloud / DICOMcloud
Azure friendly DICOMweb part 18 .NET server with qido-rs, wado-rs, stow-rs, wado-uri RESTful implementation
- dicom
- dicomweb
- dicomcloud
- wado
- wado-uri
- wado-rs
- +5 more
+3 stars
from 232 · score 1.39
32.mahmoodlab / TOAD
AI-based pathology predicts origins for cancers of unknown primary - Nature
- histology
- pathology
- wsi-images
- histopathology
- cancer-imaging-research
- cancer-research
- +9 more
+3 stars
from 183 · score 1.39
33.rii-mango / Papaya
A pure JavaScript medical research image viewer.
+2 stars
from 580 · score 1.10