1.ElliotXie / autozymeAutonomous multi-agent framework to optimize scientific softwareaccelerationagentic-aiai-agentsbioinformaticscode-optimizationgenomics+11 morePythonMIT57 total4 forks+3 starsfrom 54 · score 1.39
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3.kharchenkolab / numbatHaplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiomecancer-genomicscnv-detectionsingle-cellphylogenysingle-cell-analysissingle-cell-rna-seq+4 moreROther license233 total37 forks+1 starsfrom 232 · score 0.69
4.cafferychen777 / flashdeconvFast, deterministic cell-type deconvolution for million-bin spatial transcriptomicsbioinformaticscell-type-deconvolutioncomputational-biologydeconvolutionpythonscanpy+3 morePythonBSD-3-CLAUSE26 total0 forks+1 starsfrom 25 · score 0.69