1.scverse / squidpy
Spatial Single Cell Analysis in Python
+26 stars
from 587 · score 3.30
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2.ElliotXie / autozyme
Autonomous multi-agent framework to optimize scientific software
+15 stars
from 42 · score 2.77
3.kharchenkolab / numbat
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
+8 stars
from 225 · score 2.20
4.Dana-Farber-AIOS / pathml
Tools for computational pathology
+7 stars
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5.cafferychen777 / ChatSpatial
MCP server for spatial transcriptomics analysis through natural language interfaces.
+4 stars
from 41 · score 1.61
6.cafferychen777 / flashdeconv
Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics
+4 stars
from 22 · score 1.61