A Python implementation of global optimization with gaussian processes.
- optimization
- gaussian-processes
- bayesian-optimization
- python
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Efficiently computes derivatives of NumPy code.
- autograd
- automatic-differentiation
- numpy
- python
A PyTorch Library for Accelerating 3D Deep Learning Research
- pytorch
- 3d-deep-learning
- neural-networks
- differentiable-rendering
PennyLane is an open-source quantum software platform for quantum computing, quantum machine learning, and quantum chemistry. Create meaningful quantum algorithms, from inspiration to implementation.
Deep probabilistic analysis of single-cell and spatial omics data
- scrna-seq
- variational-bayes
- variational-autoencoder
- cite-seq
Python+Numpy+OpenGL: fast, scalable and beautiful scientific visualization
Firedrake is an automated system for the portable solution of partial differential equations using the finite element method (FEM)
Junction Tree Variational Autoencoder for Molecular Graph Generation (ICML 2018)
A tool for semi-automatic cell type classification
- python
- single-cell
- machine-learning
- scrna-seq
Iterative Linear Quadratic Regulator with auto-differentiatiable dynamics models
- trajectory-optimization
- differential-dynamic-programming
- theano
- dynamics-models
A generic interface for the environmental perception of automated driving functions in virtual scenarios.
- asam
- osi
- open-simulation-interface
- simulation
Solve automatic numerical differentiation problems in one or more variables.
Automated 3D cell detection in very large images
- microscopy
- cell-detection
- deep-learning
- image-analysis
Simulation-based Lidar Super-resolution for Ground Vehicles
The World's Most Comprehensive, Authoritative, and Structured Open Source Data Source Knowledge Base
- mcp
- data-sources
- ai
- awesome-list
An automatic code generator for nonlinear model predictive control (NMPC) and the continuation/GMRES method (C/GMRES) based numerical solvers for NMPC
- model-predictive-control
- nonlinear-model-predictive-control
- mpc
- nmpc
Safe Bayesian Optimization
- gaussian-processes
- optimization
- robotics
- reinforcement-learning
Automated 3D brain registration with support for multiple species and atlases.
- registration
- atlases
- brain
- neuroscience
Inner ear models for Python
- python
- cochlea
- inner-ear
- model
CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework
- ai4science
- llm
- multiagent-systems
- prompt-engineering
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
- biology
- fluorescence
- image-analysis
- image-processing
Autonomous multi-agent framework to optimize scientific software
- acceleration
- agentic-ai
- ai-agents
- bioinformatics
A fast MDCT implementation using SciPy and FFTs
- scientific-computing
- signal-processing
- scipy
- audio-analysis
MCP server for spatial transcriptomics analysis through natural language interfaces.
- bioinformatics
- cell-communication
- deconvolution
- machine-learning