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Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
A tool for semi-automatic cell type classification
A Python native dynamical system simulation framework in the block diagram paradigm.
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RNA Velocity generalized through dynamical modeling
bert-loves-chemistry: a repository of HuggingFace models applied on chemical SMILES data for drug design, chemical modelling, etc.
a numpy-like fast vector module for micropython, circuitpython, and their derivatives
Graph-linked unified embedding for single-cell multi-omics data integration
A blazing fast matrix library for Elixir/Erlang with C implementation using CBLAS.
a molecular descriptor calculator
Python version of the SGP4 satellite position library
Sequential regulatory activity predictions with deep convolutional neural networks.
Tools for computational pathology
Python-centric Cookiecutter for Molecular Computational Chemistry Packages
A dependency-free cross-platform swiss army knife for PDB files.
The fastest automatic differentiation library for C++, with Python bindings. Forward, adjoint and higher-order derivatives, checkpointing, Eigen support and JIT. Reproducible benchmarks against CppAD, Adept and autodiff.
A High-Level Abstraction Framework for Quantum Algorithms
Benchmarking analysis of data integration tools
Parsers and algorithms for computational chemistry logfiles
The repository host gives no description.
The repository host gives no description.
A model generator for energy system modelling and optimisation (LP/MILP).
GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
Iterative Linear Quadratic Regulator with auto-differentiatiable dynamics models