Data intensive science for everyone.
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Conda recipes for the bioconda channel.
- bioinformatics
- conda
- package-management
- hacktoberfest
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
- bioinformatics
- sequence-alignment
- genomics
- fm-index
Open source tools for computational pathology - Nature BME
- histopathology
- pathology
- weakly-supervised-learning
- whole-slide-imaging
resources for learning bioinformatics
CYaRon: Yet Another Random Olympic-iNformatics test data generator
- olympic
- informatics
- luogu
- aqours
Deep Learning Papers on Medical Image Analysis
- deep-learning
- medical-imaging
- medical-informatics
- awesome-list
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
- bioinformatics
- cross-platform
- fasta
- golang
Open Babel is a chemical toolbox designed to speak the many languages of chemical data.
- chemistry
- chemical-data
- cheminformatics
- c-plus-plus
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
- drug-repurposing
- deep-learning
- drug-target-interactions
- toolkit
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
- ai-agents
- bioinformatics
- equity
- genomics
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Cloud-native genomic dataframes and batch computing
- genetics
- vcf
- genomics
- gwas
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
C library for high-throughput sequencing data formats
- htslib
- bioinformatics
- sam
- bam
Plant phenotyping with image analysis
- science
- bioinformatics
- image-analysis
- plant-phenotyping
Precision Medicine Knowledge Graph (PrimeKG)
- knowledge-graph
- precision-medicine
- therapeutics
- bioinformatics
Python package for graph neural networks in chemistry and biology
- deep-learning
- graph-neural-networks
- dgl
- cheminformatics
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
- dna
- k-mer
- python
- bloom-filter
A Go package for engineering organisms.
- synthetic-biology
- synbio
- genetic-engineering
- molecular-biology
Interactive network visualization in Python and Dash, powered by Cytoscape.js
- plotly-dash
- plotly
- dash
- cytoscape
The Chemistry Development Kit
- code4lib
- chemistry
- java
- cheminformatics
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
- sequence-alignment
- edit-distance
- levehnstein-distance
- library