List of Computer Science courses with video lectures.
Repository Index
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Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 250,000+ scientists worldwide. 177 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
- ai-scientist
- bioinformatics
- chemoinformatics
- claude
Data Apps & Dashboards for Python. No JavaScript Required.
The most popular open source electronic health records and medical practice management solution.
- openemr
- practice-management
- emr
- ehr
Official git repository for Biopython (originally converted from CVS)
- python
- bioinformatics
- genomics
- biopython
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
- nci-itcr
- nci-qin
- quantitative-imaging
- imaging-informatics
The open-source AI workbench for scientific research
A curated list of awesome Bioinformatics libraries and software.
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
- rna-seq-data
- gene-expression
- scrna-seq-data
- bioinformatics
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
- tensorflow
- deep-neural-network
- genomics
- science
The official sources for the RDKit library
- cheminformatics
- c-plus-plus
- python
- rdkit
A workflow language for data-driven computational pipelines
- bioinformatics
- workflow-engine
- pipeline
- pipeline-framework
Making Protein folding accessible to all!
- bioinformatics
- multiple-sequence-alignment
- protein-structure
- structure-prediction
Single-cell analysis in Python. Scales to >100M cells.
- machine-learning
- data-science
- visualize-data
- transcriptomics
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
- fastq
- qc
- preprocessing
- filtering
A versatile pairwise aligner for genomic and spliced nucleotide sequences
- bioinformatics
- sequence-alignment
- spliced-alignment
- genomics
Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining
MMseqs2: ultra fast and sensitive search and clustering suite
- bioinformatics
- sequence-clustering
- profile-search
- sequence-search
A curated list of awesome AI tools, libraries, papers, datasets, and frameworks that accelerate scientific discovery — from physics and chemistry to biology, materials, and beyond.
- ai-for-science
- ai4s
- ai4science
- awesome
Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.
Useful bash one-liners for bioinformatics.
Python Materials Genomics (pymatgen) is a robust materials analysis code that defines classes for structures and molecules with support for many electronic structure codes. It powers the Materials Project.
- materials
- science
- materials-science
- materials-informatics
Official code repository for GATK versions 4 and up
A full spaCy pipeline and models for scientific/biomedical documents.
- scientific-documents
- spacy
- custom-pipes
- nlp