Repository Index

The open source air traffic simulator

• python
• traffic
• aircraft
• simulation

R package for detecting doublets in single-cell RNA sequencing data

Junction Tree Variational Autoencoder for Molecular Graph Generation (ICML 2018)

A Python platform to perform parallel computations of optimisation tasks (global and local) via the asynchronous generalized island model.

• optimization
• optimization-algorithms
• optimization-methods
• optimization-problem

Large collection of number systems providing custom arithmetic for mixed-precision algorithm development and optimization for AI, Machine Learning, Computer Vision, Signal Processing, CAE, EDA, control, optimization, estimation, and approximation.

• arithmetic
• integer-arithmetic
• fixed-point-arithmetic
• rational-arithmetic

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

• bioinformatics
• taxonomy
• cross-platform
• lineage

Sequential regulatory activity predictions with deep convolutional neural networks.

Python-centric Cookiecutter for Molecular Computational Chemistry Packages

• cookiecutter
• python-packages
• molecular-sciences
• conda-environment

A High-Level Abstraction Framework for Quantum Algorithms

Iterative Linear Quadratic Regulator with auto-differentiatiable dynamics models

• trajectory-optimization
• differential-dynamic-programming
• theano
• dynamics-models

A simple script for fracturing polygons. Also adds nice helper functions for polygons like calculateArea, triangulate, getRandomPointsInPolygon, getBoundingRect)

• gdscript
• polygon2d-fracture
• godot-engine
• godot

Reference mapping for single-cell genomics

• single-cell
• deep-learning
• rna-seq-analysis
• data-integration

JavaScript helper functions for manipulating GeoJSON

Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star

• dna
• language-model
• variant-effect-prediction
• genomics

The official implementation of 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction (ICLR 2023)

• ai-for-science
• diffusion-models
• drug-design
• equivariant-networks

pyMOR - Model Order Reduction with Python

• python
• model-reduction
• model-order-reduction
• control-systems

Collection of self-contained header-only libraries for C++17

• async
• json
• logger
• math

GraphDTA: Predicting drug-target binding affinity with graph neural networks

Source code for "DeepDTA: deep drug-target binding affinity prediction"

• protein-ligand-interactions
• convolutional-neural-networks

A generic interface for the environmental perception of automated driving functions in virtual scenarios.

• asam
• osi
• open-simulation-interface
• simulation

RNA-seq prediction with deep convolutional neural networks.

Bi-Directional Equivariant Long-Range DNA Sequence Modeling

The RAW Complex.js is a complex numbers library written in JavaScript

• complex-numbers
• vector
• trigonometric-functions
• javascript

MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)