Molecular Processing Made Easy.
- python
- molecule
- rdkit
- drug-discovery
Repository Index
81,588 visible repositories in the index
49–72 of 92 · Most stars
Vision-Language Pathology Foundation Model - Nature Medicine
- bioimage-analysis
- bioimage-informatics
- conch
- foundation-model
Dicoogle - Open Source PACS
- dicoogle
- dicom
- pacs
- medical-imaging
Graph-linked unified embedding for single-cell multi-omics data integration
- bioinformatics
- deep-learning
- single-cell
- single-cell-multiomics
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
- bioinformatics
- taxonomy
- cross-platform
- lineage
🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)
- awesome
- biomedical
- text-mining
- information-extraction
A dependency-free cross-platform swiss army knife for PDB files.
- python
- protein
- pdb
- bioinformatics
Curated (meta)list of resources for Biology.
Universal cheminformatics toolkit, utilities and database search tools
- indigo
- bingo
- cheminformatics
- chemistry
Deep Reinforcement Learning for de-novo Drug Design
- deeplearning
- reinforcement-learning
- cheminformatics
- molecular-modeling
Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk
- bioinformatics
- exact-optimization
- metabolomics
- paired-data
The Geospatial Neighborhood Analysis Package
- spatial-analysis
- urban-modeling
- geodemographics
- neighborhood-dynamics
MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
A curated list of resources for machine learning for small-molecule drug discovery
- awesome-list
- machine-learning
- cheminformatics
- drug-discovery
Urban Informatics and Visualization (UC Berkeley CP255)
Python for chemoinformatics
- chemoinformatics
- scikit-learn
- cheminformatics
- python
Graph-based molecule modeling toolkit for cheminformatics
- cheminformatics
- molecular-modeling
- chemistry
- toolkit
A FHIR® Server with internal, fast CQL Evaluation Engine
- fhir
- fhir-server
- cql-evaluation-engine
- hl7
OpenScribe is an open-source AI scribe that records patient encounters and generates structured clinical notes automatically. You keep full control over data, workflows, and patient privacy with no vendor lock-in.
- ai
- clinical
- clinical-informatics
- ehr
Open platform to manage and share standardized clinical data, designed by @ppazos at CaboLabs Health Informatics.
- clinical-data
- openehr-standard
- ehr
- cdr
Molecule Validation and Standardization
- rdkit
- python
- chemistry
- cheminformatics
AI-based pathology predicts origins for cancers of unknown primary - Nature
- histology
- pathology
- wsi-images
- histopathology
Open source tumor evidence matching for sequencing labs and hospitals without molecular tumor boards. Research prototype; oncologist review required.
- bioinformatics
- cancer-research
- computational-biology
- drug-repurposing
ChemML is a machine learning and informatics program suite for the chemical and materials sciences.
- quantum-mechanics
- materials-informatics
- data-science
- machine-learning