Repository Index

Open scientific N-dimensional image processing :microscope: :sparkler:

• image-processing
• computer-vision

Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy

• imagej
• scikit-image
• opencv
• simpleitk

A "batteries-included" distribution of ImageJ :battery:

Public domain software for processing and analyzing scientific images

• image-processing
• computer-vision

Collection of mathematical morphology methods and plugins for ImageJ

• image-processing
• image-analysis
• imagej
• fiji

ImageJ functions and macros for working with thermal image files

• heat-transfer
• temperature-reading
• thermal-imaging
• imagej-macro

Plugins for bone image analysis

• fiji-plugin
• image-analysis
• image-processing
• imagej-plugins

An interactive image processing program for biologists written in Python.

• biologists
• python
• imagej
• calcium

Plugins for ImageJ - color space conversions and color calibration

• ijp-color
• scala
• imagej
• sbt-imagej

Z-stack Depth Colorcode ImageJ FIJI plugin

• imagej-plugin
• colorcode
• fiji
• imagej

Imagej macro to calculate the MTF based on a knife edge measurement

• imagej-macro
• electron-microscopy
• image-analysis
• x-ray-imaging

Modular image and object analysis workflows for ImageJ/Fiji

• fiji-plugin
• modular
• imagej
• image-processing

#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

• segmentation
• image-processing
• zebrafish
• vasculature