Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining
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A full spaCy pipeline and models for scientific/biomedical documents.
- scientific-documents
- spacy
- custom-pipes
- nlp
Plant phenotyping with image analysis
- science
- bioinformatics
- image-analysis
- plant-phenotyping
Precision Medicine Knowledge Graph (PrimeKG)
- knowledge-graph
- precision-medicine
- therapeutics
- bioinformatics
Vision-Language Pathology Foundation Model - Nature Medicine
- bioimage-analysis
- bioimage-informatics
- conch
- foundation-model
Deep Reinforcement Learning for de-novo Drug Design
- deeplearning
- reinforcement-learning
- cheminformatics
- molecular-modeling
MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
Python for chemoinformatics
- chemoinformatics
- scikit-learn
- cheminformatics
- python
OpenScribe is an open-source AI scribe that records patient encounters and generates structured clinical notes automatically. You keep full control over data, workflows, and patient privacy with no vendor lock-in.
- ai
- clinical
- clinical-informatics
- ehr
TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524
- self-attention
- compound-protein-interaction
- transformercpi
- structure-free-virtual-sreening
Apache cTAKES is a Natural Language Processing (NLP) platform for clinical text.
- clinical
- nlp
- bioinformatics
- ai
A tool for cell instance aware segmentation in densely packed 3D volumetric images
- segmentation
- deep-learning
- bioinformatics
- neural-network
NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions
- computational-biology
- bioinformatics
- graph-convolution
- deep-learning
chemmodlab: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models