Ranked by Attention Score: stars gained over the last 30 complete days
301–400 of 452 by Attention Score · Oct 7, 2026 – Nov 5, 2026 (UTC)
A Python platform to perform parallel computations of optimisation tasks (global and local) via the asynchronous generalized island model.
Dicoogle - Open Source PACS
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
skimpy is a light weight tool that provides summary statistics about variables in data frames within the console.
bert-loves-chemistry: a repository of HuggingFace models applied on chemical SMILES data for drug design, chemical modelling, etc.
open source software for bidimensional and tridimensional remeshing
Python-centric Cookiecutter for Molecular Computational Chemistry Packages
A thin layer of graphic data types
The repository host gives no description.
A simple script for fracturing polygons. Also adds nice helper functions for polygons like calculateArea, triangulate, getRandomPointsInPolygon, getBoundingRect)
V library to develop Artificial Intelligence and High-Performance Scientific Computations
The fast Continuous Wavelet Transform (fCWT) is a library for fast calculation of CWT.
Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI (Nature Medicine). PLIP is a large-scale pre-trained model that can be used to extract visual and language features from pathology images and text description. The model is a fine-tuned version of the original CLIP model.
The repository host gives no description.
Collection of self-contained header-only libraries for C++17
The repository host gives no description.
GraphDTA: Predicting drug-target binding affinity with graph neural networks
Descriptor computation(chemistry) and (optional) storage for machine learning
RNA-seq prediction with deep convolutional neural networks.
Formal proof of the Four Color Theorem [maintainer=@ybertot]
Correctly rounded decimals for Go
Mathematical Components compliant Analysis Library
OPEM (Open Source PEM Fuel Cell Simulation Tool)
Automated 3D cell detection in very large images
Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
Graph-based molecule modeling toolkit for cheminformatics
a unified framework for modeling chemically reactive systems
Umbrella package of the 'spatstat' family................
Fast Math Library for Delphi
Wrapper for RDKit's RunReactants to improve stereochemistry handling
scPerturb: A resource and a python/R tool for single-cell perturbation data
MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.
PhyloNetworks: a julia package with utilities for phylogenetic networks
A python Two Source Energy Balance model for estimation of evapotranspiration with remote sensing data
🏃 The go-to single-cell Foundation Model
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
TUM Roborace Team Software Stack - Vehicle Simulation
Automated 3D brain registration with support for multiple species and atlases.
Chemical 2D structure editor application/applet based on the Chemistry Development Kit
Python package for image-based profiling
The repository host gives no description.
Integrated pipeline for multiplexed image analysis
CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework
Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
BulkFormer: A large-scale foundation model for human bulk transcriptomes
PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
Run scripts, explore your genome, and get personalized explanations — all in natural dialogue.
Prime numbers for Coq
Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network
scPair: Boosting single cell multimodal analysis by leveraging single cell atlases and implicit feature selection
Fast numerical array expression evaluator for Python, NumPy, Pandas, PyTables and more
[Deprecated] Use Cornerstone3D Instead https://cornerstonejs.org/
A collection of GICP-based fast point cloud registration algorithms
The Polygon Mesh Processing Library
Immutable in-memory R-tree and R*-tree implementations in Java with reactive api
A lean C++ library for working with point cloud data
Fast Clojure Matrix Library
Open-source cross-platform symbolic algebra library for C# and F#. Can be used for both production and research purposes.
Throw in the towel.
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
A Go package for engineering organisms.
RBDL is a C++ library that contains some essential and efficient rigid body dynamics algorithms such as the Articulated Body Algorithm (ABA) for forward dynamics, Recursive Newton-Euler Algorithm (RNEA) for inverse dynamics, the Composite Rigid Body Algorithm (CRBA) for the efficient computation of the joint space inertia matrix and is also able to compute forward dynamics with external contact constraints and collision impulses. Furthermore it has some basic support for forward and inverse kinematics.
⚗ A package useful for chemistry written in Python
The Point Processing Toolkit (pptk) is a Python package for visualizing and processing 2-d/3-d point clouds.
DiffSharp: Differentiable Functional Programming
🎯 A comprehensive gradient-free optimization framework written in Python
Q# libraries for the Quantum Development Kit
Main yt repository
U-Net Brain Tumor Segmentation
A library provides spatial data and geometric algorithms
a numpy-like fast vector module for micropython, circuitpython, and their derivatives
A C++14-compatible physical units library with no dependencies and a single-file delivery option. Emphasis on safety, accessibility, performance, and developer experience.
A High-Level Abstraction Framework for Quantum Algorithms
The repository host gives no description.
Iterative Linear Quadratic Regulator with auto-differentiatiable dynamics models
Quantum Computer Library for Everyone
A library designed to ease geographic coordinate format conversions, and determine sun/moon information in C#
An extension for Inkscape that makes it easier to draw optical diagrams.
Neural networks toolbox focused on medical image analysis
Deep Reinforcement Learning for de-novo Drug Design
Mol2vec - an unsupervised machine learning approach to learn vector representations of molecular substructures
Solve automatic numerical differentiation problems in one or more variables.
Voronoi / Delaunay tessellations on the sphere
formally verified category theory library
TriWild: Robust Triangulation with Curve Constraints
Bi-Directional Equivariant Long-Range DNA Sequence Modeling
Wide-Integer implements a generic C++ template for uint128_t, uint256_t, uint512_t, uint1024_t, etc.
D3 plugin which computes a treemap based on a Voronoi tesselation
Microsoft Quantum Computing Libraries for noncommercial use